MXO02567.5prime Sequence
805 bp (752 high quality bases) assembled on 2007-04-13
> MXO02567.5prime
CAGTCGACATGACCAACAACGACCCGGCCGTGGAGGCAGCCGGCTCCAGT
CGGGCCAGCAGCAGCAAACAGCAGCTGAAGCTGGAAATCACCGAGAAGGT
GCGAGTCCTGTGCCTGCACGGTTACCGCCAGAATGGAGAAGCCTTCAAAA
ACAAGCTGGGCTCCTTCCGCAAGTTCGCCAACAAGTACGCAGAGTTCGTG
TTCATCACGGCGCCGCACGTGGCCAAGGCACTGGAGTCGGCGGCGGAGCC
TGTGCCGGAGCAGAGGAGTTGGTGGGCCAACAAGGACGATGGCTCCTTCA
AGGGAACAAACAAAGGTGGTCCCGCCTTCGGCTTTCAGGAGAGCCTGCGC
TGCGTTGAGGAGGCGTGGCGGACGCACGGCCCTTTCCAGGGACTGCTAGG
CTTCTCACAGGGCGCCTGTTTCGTGGGTCTTATATGCGGCCTGGCCAAAA
AGAAGTTGACCTCCATCCGTCCGGAGTTTGCTGTGCTAGCCTCGGGCTTC
TTGTCTGGCAGTCTGGTGCACATGAGCGCCTACGAAGAGGCCATCAGCAT
ACCCACGTTGCACATCTACGGACAGACGGATGAGATCATTCCCAAGGAGA
TGAGCGAGTCCCTGGCTGCGCGCTTCAAGAACGCCGAGGTGCTGGAGCAC
AGCGGCGGACACTACTTCCCGGCCACGGCGCAGCAGAAGCAGACATTCAT
CAACTTCTTCCAGGATCGGCTGCAGGAGTACCTGGAGCACGAGGAGTTGC
AGCAGAGCGGCAATGCCTCATTCGTGGATAGCGGAGCGGAGGACGACAAC
GATGC
MXO02567.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:10:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6330-PA | 1107 | CG6330-RA | 1..814 | 9..822 | 4070 | 100 | Plus |
| CG6330-PB | 1044 | CG6330-RB | 57..751 | 128..822 | 3475 | 100 | Plus |
| CG3788-PA | 1137 | CG3788-RA | 472..518 | 459..505 | 185 | 95.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5412-RA | 1020 | CG5412-RA | 87..883 | 9..805 | 3940 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20577139..20577586 | 9..456 | 2195 | 99.3 | Plus |
| 3R | 32079331 | 3R | 20577646..20577994 | 457..805 | 1745 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:27:14 has no hits.
MXO02567.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:57 Download gff for
MXO02567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6330-PA | 1..814 | 9..822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:28 Download gff for
MXO02567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5412-RA | 87..883 | 9..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:48 Download gff for
MXO02567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5412-RA | 87..883 | 9..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:48 Download gff for
MXO02567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20577139..20577586 | 9..456 | 99 | -> | Plus |
| 3R | 20577646..20577994 | 457..805 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:28 Download gff for
MXO02567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16402861..16403308 | 9..456 | 99 | -> | Plus |
| arm_3R | 16403368..16403716 | 457..805 | 100 | | Plus |
