MXO02575.5prime Sequence
906 bp (780 high quality bases) assembled on 2007-04-13
> MXO02575.5prime
CAGTCGACATGTGCTTCTATCGGATTGTGGTCATCTGTCTTCTAGGCTCC
CTAGTGCCCTCCATAGCGGCATCCAAAGTCTGCGGACCGGAAAAGCATTG
CGTTCCCTACGAGCAGTGCAACGAGGGCTTAATGGTGGACGGAAAATTCT
ATCCGGATCGCAGCAGAACGACTTTGGATGAGAATTGTCACTATATGGAA
AAGTGCTGTAATATCCCCGATAAACTCCCGACTCCGAAAATTCCAGAGGA
GATGATGAGCTGCCCGTGTGGAGGACGCCATGATCTCTGGTACTACCTTC
GACCGCTGGGATATAAACAGCAAGAGGCCAAGTTCGGGGAGTTTCCCTGG
TTGGTGGCGGTCTACGGGTCGGATACTTATCTCTGCAGTGGAGCACTTAT
CACTCCGCTGGCGGTGATCACCACCGCGCACTGCGTTCAGAATTCGGAAA
TGGAGAAGGTTCGTCTGTTGGCCGGGGAATGGGATGCCGCCGTGGAGCTG
GAGCCCCAGCCGCACCAGCAAAGATCGGTTGTTGAGACATTAGTGCATCC
CAATTACACTCAAATGCCATTGGCCCACAACATAGCGATACTTCTGGTGG
ACAAGGAGAAACCTTTCCAGCTGGCTCCTAATGTACAGCCCATTTGCTTG
CCGCCTCCGCGAATAATGTACAACTACAGCCAGTGCTATGTGTCCGGTTG
GCAGAGGAGTGATTTTGGTAGAGCTGCAATCCTGCCCAAGCGTTGGACAC
TCTACGTCCTACCACCCGATCAATGCAGGACCAAGTTGCGATTGTCCCTC
TTGGGGCGACGCCACGCCCACAACGATAGCCTGCTGTGTGCCGGCGGCGA
CAAGGGTGACTTCGTCTGCGGTGATGTGGACATGACCGCTGTGCCGCTGA
TGTGTC
MXO02575.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:10:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11534-PA | 1479 | CG11534-RA | 1..758 | 9..766 | 3790 | 100 | Plus |
| CG11534-PA | 1479 | CG11534-RA | 753..810 | 762..819 | 290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9377-RA | 1191 | CG9377-RA | 83..980 | 9..906 | 4490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13360112..13360793 | 906..225 | 3410 | 100 | Minus |
| 2L | 23513712 | 2L | 13361268..13361483 | 224..9 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:49 has no hits.
MXO02575.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:01 Download gff for
MXO02575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11534-PA | 1..810 | 9..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:57 Download gff for
MXO02575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9377-RA | 75..980 | 1..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:21 Download gff for
MXO02575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9377-RA | 75..980 | 1..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:21 Download gff for
MXO02575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13360112..13360793 | 225..906 | 100 | <- | Minus |
| 2L | 13361268..13361488 | 1..224 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:57 Download gff for
MXO02575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13360112..13360793 | 225..906 | 100 | <- | Minus |
| arm_2L | 13361268..13361488 | 1..224 | 98 | | Minus |
