MXO02578.5prime Sequence
735 bp (705 high quality bases) assembled on 2007-04-13
> MXO02578.5prime
CAGTCGACATGAAGTCATTGCTCAATCGGATAATCCTGTGCAGCGCCTTT
CTGGCCGTGGCCAGTGGTCTGAGCTTCACGGTCACGTCTCGGATCTACAT
GGATGTGAAGCACAACAAGAAGCCGGTGGGCAGGATCACGTTTGGACTGT
TCGGGAAGCTGGCTCCCAAGACGGTGGCCAACTTCCGGCACATTTGCTTG
CGCGGCATCAACGGGACCAGCTACGTGGGCTCGCGATTCCATCGCGTGGT
GGACCGCTTTCTCGTCCAAGGCGGCGACATTGTGAACGGCGACGGAACTG
GCTCCATTAGCATCTATGGGGACTACTTTCCGGACGAGGATAAGGCTCTG
GCGGTGGAGCACAACAGACCCGGTTACTTGGGCATGGCCAATCGGGGCCC
GGACACCAATGGCTGCCAGTTTTATGTGACCACCGTGGGCGCCAAGTGGC
TGGACGGAAAGCACACCGTTTTCGGCAAGGTGCTGGAGGGAATGGACACC
ATCTATGCCATTGAGGATGTAAAAACCGATACGGATGACTTCCCCGTGGA
ACCCGTGGTGATCTCCAACTGCGGCGAGATACCCACGGAGCAGTTCGAGT
TCTACCCGGACGACTTCAACATCCTCGGATGGATCAAGGCGGCTGGTCTG
CCCGTGACCAGCTCCTTCTGCGTTCTGCTCATTTTCCACTACTTCTTCCG
CCAGCTCAACATGTACTGCGCAAGCTTTCTAGACC
MXO02578.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:10:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11200-PB | 1068 | CG11200-RB | 1..864 | 9..872 | 4320 | 100 | Plus |
| CG11200-PA | 1068 | CG11200-RA | 1..864 | 9..872 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ninaA-RA | 871 | CG3966-RA | 60..771 | 8..719 | 3560 | 100 | Plus |
| CG15824-RC | 7072 | CG15824-RC | 6371..6883 | 520..8 | 2565 | 100 | Minus |
| CG15824-RC | 7072 | CG15824-RC | 6074..6274 | 719..519 | 1005 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 877361..877873 | 8..520 | 2565 | 100 | Plus |
| 2L | 23513712 | 2L | 877970..878170 | 519..719 | 1005 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:05:41 has no hits.
MXO02578.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:02 Download gff for
MXO02578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11200-PA | 1..864 | 9..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:46 Download gff for
MXO02578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaA-RA | 60..781 | 8..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:36 Download gff for
MXO02578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaA-RA | 60..781 | 8..728 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:36 Download gff for
MXO02578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 877361..877871 | 8..518 | 100 | -> | Plus |
| 2L | 877970..878180 | 519..728 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:46 Download gff for
MXO02578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 877361..877871 | 8..518 | 100 | -> | Plus |
| arm_2L | 877970..878180 | 519..728 | 98 | | Plus |
