MXO02580.5prime Sequence
774 bp (774 high quality bases) assembled on 2007-04-13
> MXO02580.5prime
CAGTCGACATGGCAAACGAAGAGGTTAAAGACAATGCCCAACTTAAGGCA
ACTATGTTAAACTGCAATTTGAACCCCAGTGTCGCGGATGATTTTGCTGA
GTTCGAGGCAACCCTTGCGAAGATCGATTGTATACTGCAGAACAAGGCAC
CCTGTGACGATGAAGATTCAAAGGCAGGTGGCGATGCCAAGGAGAAGATC
AACTTTGACAACTTGGATGTGGATAAGGTGCGGCTTAAAGTGAAAGAAAA
TCGAACAGTCATCAACAGAAAGTCTCTAGAAGAAGACAATGAGAAGCAAG
TCAAGGATATGAACCAGAAGAGTTTCATGGAGCAGGTGGAGAAGGATGCC
AATGATCGTGCAGAGGCACGTGCCAAAGCCGAATACGAAGCAGAACTACA
GAGAAGTCAGGGAAACGAAGCATTTCGCAGCCAGAAGTACGAGAAGGCAA
TCCTACATTATGACAAGGCTATCATCAAAGTTAAGGACAGCGCTATTACA
TATTGCAATCGCGCCTTGTGCTACATCAAGCTACAGAACTATAAGCGCGC
CCTCAAGGACTGCCAGTACGTGTTGGAGAAGCTGCAGGAGAGTAATCTCC
GCGCCTGGCTCTACCAGGCCCACGCCTACAAGGGTTTGAAACAAGACGAC
AAGTTCGAGGAAAGCGTGGTCAAGGCACGTGAACACAATCCCAAGCAACT
GGCGTACATTGACAAGTACATTAAGCAACTGGAAGCCGATCTTAAAGCAC
TAGAAATAGCAAGCTTTCTAGACC
MXO02580.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:10:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3664-PA | 660 | Rab5-RA | 1..657 | 9..665 | 3285 | 100 | Plus |
| CG3664-PB | 660 | Rab5-RB | 1..657 | 9..665 | 3285 | 100 | Plus |
| CG3664-PF | 660 | Rab5-RF | 1..657 | 9..665 | 3285 | 100 | Plus |
| CG3664-PD | 660 | Rab5-RD | 1..657 | 9..665 | 3285 | 100 | Plus |
| CG3664-PC | 660 | Rab5-RC | 1..657 | 9..665 | 3285 | 100 | Plus |
| CG3664-PE | 660 | Rab5-RE | 1..657 | 9..665 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6980-RA | 927 | CG6980-RA | 66..815 | 9..758 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24807686..24808083 | 9..406 | 1990 | 100 | Plus |
| 3R | 32079331 | 3R | 24808337..24808565 | 530..758 | 1145 | 100 | Plus |
| 3R | 32079331 | 3R | 24808140..24808265 | 405..530 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:20:28 has no hits.
MXO02580.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:03 Download gff for
MXO02580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3664-PE | 1..660 | 9..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:28:40 Download gff for
MXO02580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6980-RA | 66..826 | 9..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:23 Download gff for
MXO02580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6980-RA | 66..826 | 9..770 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:23 Download gff for
MXO02580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24807686..24808083 | 9..406 | 100 | -> | Plus |
| 3R | 24808142..24808264 | 407..529 | 100 | -> | Plus |
| 3R | 24808337..24808576 | 530..770 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:28:40 Download gff for
MXO02580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20633408..20633805 | 9..406 | 100 | -> | Plus |
| arm_3R | 20633864..20633986 | 407..529 | 100 | -> | Plus |
| arm_3R | 20634059..20634298 | 530..770 | 97 | | Plus |
