MXO02581.5prime Sequence
855 bp (715 high quality bases) assembled on 2007-04-13
> MXO02581.5prime
CAGTCGACATGTCCAGAGGCGGTGCTATCGACTTGACCGGCCTATCCGAG
GAGCAGGTGAGCGAGTGGCTCCAAAGTTTCGACACGGTTCTCTGCGACGG
CGACGGCACCATATGGCAGGATGACACGGCCATCGCTGGTGCTCCGGATG
TGGTGAATGCCCTGCAGGATCGATTTGACAAAAAAGTTTACCTGATTACC
AACAATGGCCTAAAGACGCGACAGGAGCTCTTTGAGCGCTCCCAGCGCCT
TGGCTTCCATTTACCCAGCGACCGACACATCATTTCGCCCACGGCGGCCA
TCGCCGACTATCTGGTTGGGAGTCCGAAGTTCGACAGGACCCGGCACAAG
GTCTATGTGGTGGGCAATGCGGCCATTGCGCGGGAATTAAGGCAGCGCGG
AATCGACAGCTACGGAGCCGGCGGAACAGATGAACTGCCTCCGGGCGACA
AATGGCCGGACTTTGTGACACGCGAGTTTGGGAACCCAGAGGCGGCGAAG
GACGTGGGTGCCGTGGTGGTCGGCTGGGATGAGTACTTTAGCTACTGCAA
GATGGCGCGCGCCTGTCACATCCTCTGCAGTAATCCCGACGCCGCCTTTT
TGGTCACCAACCGGGATGCCGTGCACAAGTATCCATCCTTTTGTATCCCC
GGCACTGGGGCCTTTGTGGCCGGAATCGAGGCATGTTCGGAGCGTGAAGC
CCTCGAGATGGGCAAGCCAAATCCATTGGTCCTTGAGCCCTTTATCAAGG
CCGAGGGACTACGTACCGAGCGAACGCTTATGATTGGTGACTGCCTCAAA
ATAGATGTCGGTTTTCCCCAGCATTGTGGCATGCTATCGCTTCTGGTGGG
CACGG
MXO02581.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 12:10:35 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5577-RB | 2162 | CG5577-RB | 45..891 | 9..855 | 4175 | 99.6 | Plus |
| CG5577-RA | 1021 | CG5577-RA | 45..891 | 9..855 | 4175 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17840036..17840724 | 793..105 | 3445 | 100 | Minus |
| 3L | 28110227 | 3L | 17841286..17841383 | 106..9 | 490 | 100 | Minus |
| 3L | 28110227 | 3L | 17839921..17839983 | 855..793 | 225 | 90.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:20:37 has no hits.
MXO02581.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:28:44 Download gff for
MXO02581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5577-RA | 38..891 | 1..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:30 Download gff for
MXO02581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5577-RA | 38..891 | 1..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:30 Download gff for
MXO02581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17839921..17839982 | 794..855 | 95 | <- | Minus |
| 3L | 17840036..17840723 | 106..793 | 100 | <- | Minus |
| 3L | 17841287..17841389 | 1..105 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:28:44 Download gff for
MXO02581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17833021..17833082 | 794..855 | 95 | <- | Minus |
| arm_3L | 17833136..17833823 | 106..793 | 100 | <- | Minus |
| arm_3L | 17834387..17834489 | 1..105 | 96 | | Minus |
