Clone MXO02588 Report

Search the DGRC for MXO02588

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:25
Well:88
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG31200-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02588.5prime Sequence

876 bp (686 high quality bases) assembled on 2007-04-13

> MXO02588.5prime
CAGTCGACATGCTTCACAGCGGAAAACTTGTTCAGCTTTTGACTCTGGCT
TGGCTAGGCGCATTGACGATGGCAGAATTTCGATGCGGTCGTCTGGATGA
AAAGCTATTGTACACCACCAACGAGCAGGCGGAACCCTCCGAGAATCCCT
GGGTGGGCATTCTGCTGGAGGATCAGGGAAATCGGTACGAGAATACAAGG
TGCTCCGTAGTTATTATTAACGAGCTGCACATCCTCAGTACTGCGACGTG
CGTAAAGCGCTTTAGCCAACGATCCGGAGACACCAAAGCCGTGGCAATGT
TGGGCGTTTGGGACGAGACTGACTCCCCGGAGGAGGAGCTGTCGTGCAAC
GACAAGGACTTCTGTGTGCCGGGGCCTGAGCTGTACAAGGTGGTGGAGAT
CAAGGTCCATCCGCAAACGGACAAGGACACGGGGGACAACGACTTGGCCA
TCCTTCGGCTGGAAAAACCAGTCGAGTGGACCAACTGGGTTCAGCCGATC
TGCTTGGAGGGCACTTCGGAACCGGAAACGCTGACCAATCGCAACCTGCA
CTACACCGGATTCAACCATATGGCCTCGGAGAAGGGCAAGGGGTTGGCCA
TGACAGTATCTACTCAAAAGTGCAAACAATTGACATCCTCCAGCGTCCTA
GTACCGGTGAACCAGCTGTGCGGCTATCCCGTGAAGAGGAACCAGTTCTA
TCCGGGAGCACCACTGATGGACATCGATGTGCGAGATGAGAAGCCGCACA
ACTTCTACCTGGTGGGCATTCTGGTCCGGAACGTAGATGCCGGACAGGCT
ACCACTCAAGTCTATCAGAATGTCCGACGCGCCCGCTCCTGAATAATGGA
AAATTTGAAAGGCAGCTTTCTAGACC

MXO02588.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12235-PA 1137 Arp11-RA 1..813 9..821 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31200-RA 915 CG31200-RA 16..866 9..859 4210 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20744283..20744965 859..177 3370 99.6 Minus
3R 32079331 3R 20745086..20745204 178..60 595 100 Minus
3R 32079331 3R 20745272..20745323 60..9 260 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:07:06 has no hits.

MXO02588.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:06 Download gff for MXO02588.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12235-PA 1..812 9..820 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:46 Download gff for MXO02588.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31200-RA 9..870 1..865 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:31 Download gff for MXO02588.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31200-RA 9..870 1..865 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:31 Download gff for MXO02588.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20744279..20744964 178..865 99 <- Minus
3R 20745087..20745203 61..177 100 <- Minus
3R 20745272..20745330 1..60 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:46 Download gff for MXO02588.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16570809..16570925 61..177 100 <- Minus
arm_3R 16570994..16571052 1..60 93   Minus
arm_3R 16570001..16570686 178..865 99 <- Minus