MXO02588.5prime Sequence
876 bp (686 high quality bases) assembled on 2007-04-13
> MXO02588.5prime
CAGTCGACATGCTTCACAGCGGAAAACTTGTTCAGCTTTTGACTCTGGCT
TGGCTAGGCGCATTGACGATGGCAGAATTTCGATGCGGTCGTCTGGATGA
AAAGCTATTGTACACCACCAACGAGCAGGCGGAACCCTCCGAGAATCCCT
GGGTGGGCATTCTGCTGGAGGATCAGGGAAATCGGTACGAGAATACAAGG
TGCTCCGTAGTTATTATTAACGAGCTGCACATCCTCAGTACTGCGACGTG
CGTAAAGCGCTTTAGCCAACGATCCGGAGACACCAAAGCCGTGGCAATGT
TGGGCGTTTGGGACGAGACTGACTCCCCGGAGGAGGAGCTGTCGTGCAAC
GACAAGGACTTCTGTGTGCCGGGGCCTGAGCTGTACAAGGTGGTGGAGAT
CAAGGTCCATCCGCAAACGGACAAGGACACGGGGGACAACGACTTGGCCA
TCCTTCGGCTGGAAAAACCAGTCGAGTGGACCAACTGGGTTCAGCCGATC
TGCTTGGAGGGCACTTCGGAACCGGAAACGCTGACCAATCGCAACCTGCA
CTACACCGGATTCAACCATATGGCCTCGGAGAAGGGCAAGGGGTTGGCCA
TGACAGTATCTACTCAAAAGTGCAAACAATTGACATCCTCCAGCGTCCTA
GTACCGGTGAACCAGCTGTGCGGCTATCCCGTGAAGAGGAACCAGTTCTA
TCCGGGAGCACCACTGATGGACATCGATGTGCGAGATGAGAAGCCGCACA
ACTTCTACCTGGTGGGCATTCTGGTCCGGAACGTAGATGCCGGACAGGCT
ACCACTCAAGTCTATCAGAATGTCCGACGCGCCCGCTCCTGAATAATGGA
AAATTTGAAAGGCAGCTTTCTAGACC
MXO02588.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:10:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12235-PA | 1137 | Arp11-RA | 1..813 | 9..821 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31200-RA | 915 | CG31200-RA | 16..866 | 9..859 | 4210 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20744283..20744965 | 859..177 | 3370 | 99.6 | Minus |
3R | 32079331 | 3R | 20745086..20745204 | 178..60 | 595 | 100 | Minus |
3R | 32079331 | 3R | 20745272..20745323 | 60..9 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:07:06 has no hits.
MXO02588.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:06 Download gff for
MXO02588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12235-PA | 1..812 | 9..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:46 Download gff for
MXO02588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31200-RA | 9..870 | 1..865 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:31 Download gff for
MXO02588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31200-RA | 9..870 | 1..865 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:31 Download gff for
MXO02588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20744279..20744964 | 178..865 | 99 | <- | Minus |
3R | 20745087..20745203 | 61..177 | 100 | <- | Minus |
3R | 20745272..20745330 | 1..60 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:46 Download gff for
MXO02588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16570809..16570925 | 61..177 | 100 | <- | Minus |
arm_3R | 16570994..16571052 | 1..60 | 93 | | Minus |
arm_3R | 16570001..16570686 | 178..865 | 99 | <- | Minus |