MXO02589.5prime Sequence
900 bp (738 high quality bases) assembled on 2007-04-13
> MXO02589.5prime
CAGTCGACATGTCGGGAATCGCTGCCAAAAAGATTGCCGAAGCGGAGGAC
CTGGTGAAGCAGGCCGAGAAGAGCTTGAAGTTGTCCATGCTGAAATGGGT
TCCTGATTACGATAGTGCTGCGGATGAGTATTCCAAAGCTGCCACTGCAT
ATCGAATAGCTAAAAGTTATGATAAGAGCAAGGAGTGTTTTCTGAAGGCA
ATCGACGCCTATAAAAACAACAAGTCTTGGTTCCATGCTGCAAAGGCATA
CGAACAGATCATTTTGCTGTCAAAGGATGCCGATAAGCTACACGAAGTTG
AGGAATACGCCAACAAATCGGCGAGTTTGTATCAACAGCACGGTTCCCCA
GAGGCAGCCGCATCCGCCTTGGATAAAGCCGCCAAGTTAACTGAATCCAA
GCATCCTGACATGGCTTTGCGCTTCTATCAGCATGCTCTAGAAGTCATAA
TGATCGAGGATTCCGTCCGTCAAGCAGCCGAGTATGCATCAAAAGTTTCC
AGGATACTGGTCAAACTAAGGAGGTACGACGAAGCCACGAATGCGCTCAA
AAAGGAGATCAGCTTGAATCAGCAAACGGAATCTTACGGACAAATTGGAC
GCCTAGTTGTGGCCTTGGTGATGGTCCAACTGGCTCGCGGGGATTCCGTG
GAAGCCGAAAAGACCTTCAGGGAGTGGGGAAACTGCTGCGAGCCAGAGGA
AGTGTCCACACTGCAGACCCTTCTGCAAGCCTTCGATGACGAGGATCCCG
AGTTAGCTGCTAGGATGCTGGCATCCCCATTCATACGACATATGGATGTT
GAGTACGCTATTCTATCTAAAAACATTCCACTACCTCAGGGTATACAGAT
GGGAGAAGAAGGCTGGCGACACTGCTGCTGAACCCACGACGCCCGAGACG
MXO02589.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:10:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1725-PC | 627 | dlg1-RC | 1..624 | 9..632 | 3120 | 100 | Plus |
| CG1725-PJ | 627 | dlg1-RJ | 1..624 | 9..632 | 3120 | 100 | Plus |
| CG1725-PI | 627 | dlg1-RI | 1..624 | 9..632 | 3120 | 100 | Plus |
| CG1725-PH | 2736 | dlg1-RH | 1..438 | 9..446 | 2190 | 100 | Plus |
| CG1725-PB | 2913 | dlg1-RB | 1..276 | 9..284 | 1380 | 100 | Plus |
| CG1725-PF | 2451 | dlg1-RF | 911..1167 | 28..284 | 1285 | 100 | Plus |
| CG1725-PB | 2913 | dlg1-RB | 454..615 | 285..446 | 810 | 100 | Plus |
| CG1725-PF | 2451 | dlg1-RF | 1345..1506 | 285..446 | 810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaSnap1-RA | 1117 | CG3988-RA | 71..955 | 9..893 | 4365 | 99.7 | Plus |
| sei-RC | 3197 | CG3182-RC | 137..384 | 769..522 | 1240 | 100 | Minus |
| gammaSnap2-RA | 1002 | CG6208-RA | 119..812 | 128..821 | 725 | 74 | Plus |
| sei-RC | 3197 | CG3182-RC | 446..520 | 526..452 | 375 | 100 | Minus |
| sei-RC | 3197 | CG3182-RC | 94..138 | 880..835 | 205 | 97.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24047504..24047861 | 880..522 | 1745 | 99.7 | Minus |
| 2R | 25286936 | 2R | 24048066..24048262 | 452..256 | 985 | 100 | Minus |
| 3R | 32079331 | 3R | 10120589..10121282 | 821..128 | 725 | 73.6 | Minus |
| 2R | 25286936 | 2R | 24048335..24048451 | 257..141 | 585 | 100 | Minus |
| 2R | 25286936 | 2R | 24047923..24047997 | 526..452 | 375 | 100 | Minus |
| 2R | 25286936 | 2R | 24048639..24048708 | 141..72 | 350 | 100 | Minus |
| 2R | 25286936 | 2R | 24048769..24048833 | 73..9 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:07:12 has no hits.
MXO02589.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:06 Download gff for
MXO02589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1725-PJ | 1..627 | 9..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:48 Download gff for
MXO02589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaSnap-RA | 64..962 | 3..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:33 Download gff for
MXO02589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaSnap1-RA | 64..962 | 3..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:33 Download gff for
MXO02589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24047504..24047859 | 524..880 | 99 | <- | Minus |
| 2R | 24047926..24047996 | 453..523 | 100 | <- | Minus |
| 2R | 24048066..24048260 | 258..452 | 100 | <- | Minus |
| 2R | 24048335..24048450 | 142..257 | 100 | <- | Minus |
| 2R | 24048639..24048706 | 74..141 | 100 | <- | Minus |
| 2R | 24048769..24048840 | 3..73 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:48 Download gff for
MXO02589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19935027..19935382 | 524..880 | 99 | <- | Minus |
| arm_2R | 19935449..19935519 | 453..523 | 100 | <- | Minus |
| arm_2R | 19935589..19935783 | 258..452 | 100 | <- | Minus |
| arm_2R | 19935858..19935973 | 142..257 | 100 | <- | Minus |
| arm_2R | 19936162..19936229 | 74..141 | 100 | <- | Minus |
| arm_2R | 19936292..19936363 | 3..73 | 95 | | Minus |
