MXO02593.5prime Sequence
711 bp (711 high quality bases) assembled on 2007-04-13
> MXO02593.5prime
CAGTCGACATGGCGGTGCGACCTTTTGGCCCTGGACCCGGCGTTTACATG
CTGCCCCCCACTGTGGGCTATGATAAGCATGACAACCGCAAACAGCGGTT
GCCGCAGTACTCTTTCGGCATGCGCACCCGTGCTCCTGGTGAGGATCTGG
GTCCTGGTCCAGGGGCCTACAAGGTGGACAAGTTGACTCGCTATGGCACG
AGCAAGGGTTTGGAGTTCTCGATGGCGCCCAGAACCAATGTCATCGATAA
GCGAAGCAGTCCCGGTCCGGGAGCACACGATGTTCATAATAGGCCATTCT
TTAAGGGGGTTAATGCTCCTTCGTATTCGATGGGCCTACGAACGGACTTT
AACTTCAAGAAGGATGGTCCCGGTCCCAATGCCTACAAGTACGAGGTCAA
TGCCGTTCGTCCTGGAGTCCCGAGCTATAGCATGGGACTACAAACAAAGA
TTTTGAACAAGACGAATTCTCCGGGTCCGGCTGCATATGGCGGTGGTGAT
ATCAATGTCAAACTGACACGTGCTCCGATATACTCGATGCAGCCGCGCAC
CACTATTCCGGGCGAGAATGTCGGACCTGGACCCAACTACTACGACCTCA
TGTACTATCGTCCTGGCAAGAGTGGACCGGGCTACTCCTTTGGTGTGCGC
CACCACCAGTTCGCTCCGCCTATGATAGTTAGATGTGACAATATGGCAAG
CTTTCTAGACC
MXO02593.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 12:10:47 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10252-RA | 833 | CG10252-RA | 84..770 | 9..695 | 3435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23695284..23695545 | 695..434 | 1310 | 100 | Minus |
| 3R | 32079331 | 3R | 23695859..23696083 | 251..27 | 1110 | 99.6 | Minus |
| 3R | 32079331 | 3R | 23695616..23695804 | 434..246 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:31:20 has no hits.
MXO02593.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:27:03 Download gff for
MXO02593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10252-RA | 84..770 | 9..695 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:15:06 Download gff for
MXO02593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10252-RA | 84..770 | 9..695 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:15:06 Download gff for
MXO02593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23696144..23696162 | 9..27 | 100 | | Minus |
| 3R | 23695284..23695545 | 434..695 | 100 | <- | Minus |
| 3R | 23695617..23695803 | 247..433 | 100 | <- | Minus |
| 3R | 23695864..23696082 | 28..246 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:27:03 Download gff for
MXO02593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19521006..19521267 | 434..695 | 100 | <- | Minus |
| arm_3R | 19521339..19521525 | 247..433 | 100 | <- | Minus |
| arm_3R | 19521586..19521804 | 28..246 | 100 | <- | Minus |
| arm_3R | 19521866..19521884 | 9..27 | 100 | | Minus |
