MXO02596.5prime Sequence
561 bp (561 high quality bases) assembled on 2007-04-13
> MXO02596.5prime
CAGTCGACATGGATGACATACCTCCCGATGTGCTGGATGCGGTTCCCGCT
GGCACCATTAAGGTCATCTATGGCGATGACTTGGAGGTCAAGCAGGGCAA
CGAGCTAACCCCCACCCAGGTGAAGGACCAACCGATTGTCAGCTGGTCTG
GGCTGGAGGGAAAGTCCAACCTATTGACCCTGCTCATGGTGGATCCCGAT
GCACCGACTCGTCAAGATCCCAAGTACCGTGAGATTCTGCACTGGTCTGT
GGTCAACATTCCCGGCAGCAATGAGAATCCTTCTGGTGGCCACTCCCTAG
CGGACTACGTTGGATCTGGACCGCCCAAGGACACTGGCCTGCATCGGTAT
ATTTTCCTCCTCTATCGCCAGGAGAACAAGATCGAGGAGACGCCCACTAT
ATCCAATACTACTCGCACAGGCCGTTTGAACTTCAACGCCCGGGACTTTG
CCGCCAAACATGGATTGGGCGAGCCCATTGCCGCCAATTATTACCAGGCC
CAGTATGATGACTATGTGCCAATTCGGAATAAAACGATCGTAGGCGCAAG
CTTTCTAGACC
MXO02596.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7054-PA | 540 | CG7054-RA | 16..537 | 24..545 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:52:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7054-RA | 893 | CG7054-RA | 289..827 | 7..545 | 2650 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:52:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22465273..22465675 | 7..409 | 1970 | 99.3 | Plus |
| 3R | 32079331 | 3R | 22465737..22465872 | 410..545 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:52:19 has no hits.
MXO02596.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:09 Download gff for
MXO02596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7054-PA | 1..540 | 9..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:57 Download gff for
MXO02596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7054-RA | 283..834 | 1..554 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:37 Download gff for
MXO02596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7054-RA | 283..834 | 1..554 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:37 Download gff for
MXO02596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22465737..22465879 | 410..554 | 97 | | Plus |
| 3R | 22465267..22465675 | 1..409 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:57 Download gff for
MXO02596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18290989..18291397 | 1..409 | 98 | -> | Plus |
| arm_3R | 18291459..18291601 | 410..554 | 97 | | Plus |
