MXO02601.5prime Sequence
834 bp (640 high quality bases) assembled on 2007-04-10
> MXO02601.5prime
CAGTCGACATGGGCACGCCTCGTCTGACCGTAGTACACGGTCTAATCCTT
CTGCTCCTTGTGGAGCTAGGTTTGACTGCGGTCAGCGATACGGAGTGGGA
CCAGTACAAGGCTAAGTACAACAAGCAGTACAGGAACAGGGACAAATACC
ACCGGGCGCTATACGAACAGAGGGTCCTGGCGGTGGAAAGCCACAACCAG
CTCTATTTGCAGGGAAAGGTTGCATTCAAGATGGGACTAAACAAGTTCTC
CGACACAGATCAGAGAATCCTCTTCAATTATCGCTCGTCGATCCCAGCGC
CGCTGGAGACGAGTACCAATGCACTTACGGAGACTGTAAACTACAAGAGG
TACGACCAGATCACCGAAGGAATCGACTGGCGGCAGTACGGCTATATATC
GCCAGTGGGAGACCAGGGCACCGAGTGCCTGAGCTGCTGGGCCTTCTCCA
CCTCGGGTGTTCTTGAGGCACATATGGCGAAGAAGTATGGAAATCTGGTT
CCCCTTTCACCCAAGCACTTGGTGGACTGTGTTCCCTATCCGAATAACGG
CTGCAGCGGTGGTTGGGTGAGCGTGGCCTTTAACTACACCAGGGACCATG
GCATCGCCACAAAGGAATCCTATCCGTACGAGCCTGTATCAGGAGAATGC
CTGTGGAAAAGCGACAGAAGTGCAGGCACATTGTCGGGCTACGTCACTCT
CGGCAACTACGATGAACGGGAACTGGCGGAGGTGGTCTACAACATTGGAC
CCGTGGCGGTGTCCATTGACCATCTCCACGAGGAATTCGATCAGTACTCC
GGTGGAGTCCTCAGTATTCCGGCGTGCAGATCTA
MXO02601.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:06:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11459-PA | 1011 | CG11459-RA | 1..826 | 9..834 | 4130 | 100 | Plus |
| CG1075-PA | 825 | CG1075-RA | 491..575 | 709..793 | 250 | 91.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11459-RB | 1413 | CG11459-RB | 37..862 | 9..834 | 4130 | 100 | Plus |
| CG11459-RA | 1123 | CG11459-RA | 37..862 | 9..834 | 4130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6026377..6027202 | 834..9 | 4130 | 100 | Minus |
| 3R | 32079331 | 3R | 6028003..6028416 | 391..805 | 960 | 82.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:07:06 has no hits.
MXO02601.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:09 Download gff for
MXO02601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11459-PA | 1..825 | 9..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:12 Download gff for
MXO02601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11459-RA | 28..861 | 1..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:54 Download gff for
MXO02601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11459-RA | 28..861 | 1..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:54 Download gff for
MXO02601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6026378..6027211 | 1..833 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:12 Download gff for
MXO02601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1852100..1852933 | 1..833 | 99 | | Minus |
