MXO02607.5prime Sequence
846 bp (771 high quality bases) assembled on 2007-04-10
> MXO02607.5prime
CAGTCGACATGGCTGTGTATCGTCCCCGCGGCACCCTGGCCAGGGTAATC
CACGCCAAATTCCACAACGACAACTCTCTGGAGGACATAGACACTCGGAA
GTGGTACTGCCTGAACCACGAGCTGCCGCCGAGATTCCAGTCCAAGTTCG
TGCCGCTCGAGCCGGATGCCACCACCGTGAGCTGGCTGGAGCGCACCAAG
GCGCTTTCGGCAAACATCTGGACCCACTTGTGGCACGCCCTGGCTCGCTC
AATCCTGCAGTTCTTCATGACCCAGACGGACATCAACGGGTTCCTGAAGC
GCGGCTCCATGTTCATACTGTCCGAGGAACAGTTTCGCAAGCTGCTAGTA
GCAGGCGGCTTTCAGCCTGCCAGCGGTCAAGAACCTGTCACGTTGCTGGA
TATCGGAGCCGGGGACGGTGAGATTTCGCTGCGCGTGGCCAACACCGTTT
CCGAGCTGAGCGGAAGTGCCGGGCTGCGGGTCTTCGCCACCGAGGCCAGT
TGGACCATGCGCGATCGGCTGAAGAAGCTGAACTTCAACGTAATCACCGA
GATAGACGGTCTGCAGAACCTGGAATTGATTCTGTGCCTCAACGTATTGG
ACCGCTGCTTCGATTCATTCAAGCTGCTCGAGGACATTCACCTGGCACTA
GCTCCCAATGGTCGAGCAGTTGTGGCCTTAGTACTTCCCTACATGCACTA
CGTGGAGACGAATACCTCGCATCTGCCGCTGCGCCCGCTGCTGGAGAACA
ACGGGCGACAGGCGTCGTTCGAGGAGGAGGCGGCCAGGTTTATGGAGCTG
CTGGAGAACTGTGGCTACCGCGTGGAGGCATGGACCAAGGCGCCGT
MXO02607.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5339-PA | 918 | CG5339-RA | 1..838 | 9..846 | 4190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5339-RA | 1239 | CG5339-RA | 99..937 | 8..846 | 4195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23897198..23897657 | 846..387 | 2300 | 100 | Minus |
| 2R | 25286936 | 2R | 23897713..23898001 | 388..100 | 1445 | 100 | Minus |
| 2R | 25286936 | 2R | 23898055..23898148 | 101..8 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:26:57 has no hits.
MXO02607.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:12 Download gff for
MXO02607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5339-PA | 1..838 | 9..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:59 Download gff for
MXO02607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5339-RA | 92..937 | 1..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:19 Download gff for
MXO02607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5339-RA | 92..937 | 1..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:19 Download gff for
MXO02607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23897715..23897999 | 102..386 | 100 | <- | Minus |
| 2R | 23898055..23898155 | 1..101 | 96 | | Minus |
| 2R | 23897198..23897657 | 387..846 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:59 Download gff for
MXO02607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19785238..19785522 | 102..386 | 100 | <- | Minus |
| arm_2R | 19785578..19785678 | 1..101 | 96 | | Minus |
| arm_2R | 19784721..19785180 | 387..846 | 100 | <- | Minus |
