MXO02609.5prime Sequence
873 bp (777 high quality bases) assembled on 2007-04-10
> MXO02609.5prime
CAGTCGACATGGAGAAGGTTTGTCATTTTTTCCGCAACAACTACGTGCTG
GCCAATTGCGAGGATGCCATATACAAAAAGGCATTCTCCCTGAATCTGTC
CCACTACCAAATCTCCGACGTTCCGGGCATCATAGAGAAGTGCGAGACGC
TGATGAAGCTGTTCCTCAACCAAAACAAGCTAACAAAGATTCCATCCTCC
ATTGGTAGTTTGATGCGACTTCAGGTCCTCACGTTGGACTACAATAAACT
GGACGAATTCCCGCTCTGCATCTGTCGTTTGGTCCGGCTGAAGTTTCTCA
ACATCAGCTGCAATAACATTAGTAGTTTGCCACCCGAACTGGGATACCTC
ACTCAGCTGGAGACGTTCTGGTGTAATAATACTGGGCTCCTGGAGCTGCC
CAACGAAATTCGTAACTGTGAACACCTCGAGACGCTGGGCGTACGGGGAA
ATCCCTTGAAGAAGTTGCCCGATGCCATAGGCGCTCTGTCCTCCCTGCGT
TGGCTAACAGCCGAGGGCTGCGAACTCAGCGAAGTGCCACTGACCATGGC
GTTGCTGGGAAATTTGGTGCATCTGAATCTTAAGGGGAATCGATTGCGAC
GGCTGCCCAGGATGCTGATGGCCATGCAGAAGCTGCAGTTTGCTTTTCTC
AACGAAAATTGTATTGACGAGATGCCCACGCGGTCACAACTGGAGGAGTT
GCGGACTCTTCACATGCTCAACCTGTCCAAGAATCCCATCAGCCTGCACC
GCGATCTACAGCTAATGGCTTTGCGCCAGACGAACCTTTATGTGGAGCTG
CCGTCAGATCCCGCCAATATTTGCGATGGTCTCGCCAGTCGAGCTAGCCT
CAACGCCCAGGAACAGCAGGAAG
MXO02609.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10307-PA | 1026 | CG10307-RA | 1..863 | 9..871 | 4240 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10307-RB | 1177 | CG10307-RB | 82..948 | 5..871 | 4290 | 99.7 | Plus |
| CG10307-RA | 1362 | CG10307-RA | 267..1133 | 5..871 | 4290 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21689282..21689868 | 187..773 | 2905 | 99.7 | Plus |
| 2R | 25286936 | 2R | 21689039..21689222 | 5..188 | 905 | 99.5 | Plus |
| 2R | 25286936 | 2R | 21689926..21690024 | 773..871 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:30:49 has no hits.
MXO02609.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:13 Download gff for
MXO02609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10307-PA | 1..864 | 9..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:36 Download gff for
MXO02609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10307-RA | 123..995 | 1..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:18 Download gff for
MXO02609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10307-RA | 262..1134 | 1..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:18 Download gff for
MXO02609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21689034..21689222 | 1..188 | 97 | -> | Plus |
| 2R | 21689284..21689868 | 189..773 | 99 | -> | Plus |
| 2R | 21689927..21690025 | 774..873 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:36 Download gff for
MXO02609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17576539..17576727 | 1..188 | 97 | -> | Plus |
| arm_2R | 17576789..17577373 | 189..773 | 99 | -> | Plus |
| arm_2R | 17577432..17577530 | 774..873 | 99 | | Plus |
