MXO02610.5prime Sequence
648 bp (623 high quality bases) assembled on 2007-04-10
> MXO02610.5prime
CAGTCGACATGGCCCTGCGACGCTGTCACTTGAACCCGAAGAAAACGCTT
TTCCTGTTGTGCGACATTCAAAAAAAGTTCCGACCGGCCATGCCGCTCTT
TGATAACATGATCAAAAACGTCGACAAACTAACTCGGGCGGGAAAGGCTT
TAGATGTTCCTCTGATTGTAACCGAACACTATCCGGAAAAACTAGGAAAA
ACAGTGGCCCAACTGGATGTAAGCCATGCGAAGCTGGTCTCCGGTAAAAC
CCTTTTCAGCATGTTTACTCCCGAAGTCAAGGCTGTGATCAAGGATATCT
TCAATGACAAGCCAGAGGATGTCGTGCTATATGGCCTCGAGTCCCACATT
TGCGTGGAGCAGACCGCCATTTTTCTCCCCCACCACAACATCAACGTATA
CATAGTGGCGGACTGCTGCTCCTCCAGGCTGAACCAGGATCGAGATCTAG
CCCTGGATCGCCTGCATCAAGCGGGCTGTGTGATCACCACTAGTGAGAGC
GTTATCTTCGACTTGGTTCGAGATAAGAACAACCCCAAGTTCGATGTGGT
CCGGAAATTGGTGAACCAGCCGTCGGTGGATATGGAACTCACGCGCAACG
GGAGCGGAGTGCCAGCGGGCACTGCCAAGCTGGCAAGCTTTCTAGACC
MXO02610.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3663-PA | 627 | CG3663-RA | 1..362 | 9..370 | 1785 | 99.7 | Plus |
| CG3663-PA | 627 | CG3663-RA | 379..624 | 387..632 | 1180 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3663-RA | 780 | CG3663-RA | 93..716 | 9..632 | 2970 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24662053..24662345 | 340..632 | 1330 | 96.9 | Plus |
| 2R | 25286936 | 2R | 24661788..24661997 | 132..341 | 1050 | 100 | Plus |
| 2R | 25286936 | 2R | 24661595..24661717 | 9..131 | 600 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:34:46 has no hits.
MXO02610.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:13 Download gff for
MXO02610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3663-PA | 1..627 | 9..635 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:55 Download gff for
MXO02610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3663-RA | 93..716 | 9..632 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:00 Download gff for
MXO02610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3663-RA | 93..716 | 9..632 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:00 Download gff for
MXO02610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24661595..24661717 | 9..131 | 99 | -> | Plus |
| 2R | 24661788..24661997 | 132..341 | 100 | -> | Plus |
| 2R | 24662055..24662345 | 342..632 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:55 Download gff for
MXO02610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20549118..20549240 | 9..131 | 99 | -> | Plus |
| arm_2R | 20549311..20549520 | 132..341 | 100 | -> | Plus |
| arm_2R | 20549578..20549868 | 342..632 | 96 | | Plus |
