MXO02612.5prime Sequence
803 bp (788 high quality bases) assembled on 2007-04-10
> MXO02612.5prime
CAGTCGACATGTCGGGATCACTGCCAGCTACTTTCGTCAAGGGTTTCCAC
GATGAGGAGAAGGTGCGTCGTATGGAGTACCGCCAACTCGGATCCACGGG
TCTGCGAGTATCCAAAATTGCTTTGGGTGGTGCCACTCTCTCCAAGCTCT
TCTCCGATGACTTCGATCGCGAGGAGGGCATCCTCACGGTGCAGGAAGCC
ATTAGATCCGGTATCAACTACATAGACACGGCTCCCTTTTATGGCCAAGG
CAAATCGGAAGAGCTGCTTGGCCAGGCGCTCAAGGATGTGCCCCGGGAGG
CCTATTATATAGCAACTAAAGTTGCACGTTACGAGTTGGATCCAAACAAT
ATGTTCGACTATACGGCTGCCATGGCTCGGGAGAGTGTGAAGCGTAGTCT
GGAGCTGCTCCAGTTGGACAGGGTGGACGTACTACAGGTTCATGACGTGG
ATGCGGCACCTAGTCTGGACATGGTGCTGAATGAGACCATACCCGTCCTC
GAGGAGTACGTCCAGGCGGGAAAGGCTCGATTCATCGGAGTCACCGCCTA
CGATGTGGACGTGCTGAAGGAGTGTGCCGAGCGGGGCAAAGGTCGCATCC
AGGTGGTGCTCAACTATGCCCGCTACACCCTGTTGGACAACACTTTGCTG
CGCCACATGAAGGCCTTCCAGGAGATGGGCGTGGGCGTTGTCTGTGCGGC
CGCGCACTCTCTGGGACTCCTAAGCAACGCTGGACCCCAGTCCTGGCATC
CTGGTAGTCCGGAACTCCTAGCTGTGGGCAAACGGGGAGCCGAAATCTGT
CAG
MXO02612.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3397-PA | 1029 | CG3397-RA | 1..795 | 9..803 | 3950 | 99.8 | Plus |
| CG12224-PA | 885 | CG12224-RA | 242..641 | 337..736 | 1175 | 91.7 | Plus |
| CG12224-PA | 885 | CG12224-RA | 1..97 | 9..105 | 485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3397-RA | 1187 | CG3397-RA | 34..828 | 9..803 | 3960 | 99.9 | Plus |
| CG12224-RC | 1628 | CG12224-RC | 523..1304 | 9..803 | 2465 | 87.4 | Plus |
| CG12224-RB | 1109 | CG12224-RB | 4..785 | 9..803 | 2465 | 87.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11984078..11984508 | 439..9 | 2140 | 99.8 | Minus |
| 3R | 32079331 | 3R | 11983659..11984028 | 803..434 | 1850 | 100 | Minus |
| 3R | 32079331 | 3R | 11981185..11981554 | 803..434 | 1310 | 90.3 | Minus |
| 3R | 32079331 | 3R | 11981604..11982021 | 439..9 | 1160 | 85.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:06 has no hits.
MXO02612.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:14 Download gff for
MXO02612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3397-PA | 1..795 | 9..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:53 Download gff for
MXO02612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3397-RA | 31..828 | 2..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:58 Download gff for
MXO02612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3397-RA | 31..828 | 2..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:58 Download gff for
MXO02612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11983659..11984024 | 438..803 | 100 | <- | Minus |
| 3R | 11984080..11984511 | 2..437 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:53 Download gff for
MXO02612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7809381..7809746 | 438..803 | 100 | <- | Minus |
| arm_3R | 7809802..7810233 | 2..437 | 98 | | Minus |
