MXO02613.5prime Sequence
769 bp (767 high quality bases) assembled on 2007-04-10
> MXO02613.5prime
CAGTCGACATGTCACTAAATCGAGGAAGCAAGATGCTCCTGCGGGCGTTA
ACGCCCCAAATTTTGAGGCGTGGCAAGGCGGACTATGGCAAGACGGTGTG
CAACCTGAAGATCAACAAGGCAACAAAGGTTCTAGTCCAGGGATTCACCG
GCAAGCAGGCCACTTTCCACTCGGAGGAGTCCATAAAGTACGGAACCAAT
ATAGTTGGCGGTGTGAATCCCAAAAAGGGAGGTACGGAGCATCTGGGCAA
GCCCGTATTCAAATCGGTGGCAGAAGCTGTGGAGAAGGCGAAGCCAGATG
CCACGGTGATCTTTATACCACCTCCATCCGCCGCCGAGGGTATTTGCGCG
GCTATCGAGAGTGAAATTGGCTTGATTGTGGCCATCACCGAGGGTATTCC
CCAGGCGGATATGGTGCGGATATCGCAAATGCTGAATTGCCAGGAGAAGT
CCCGCCTGCTGGGACCCAACTGTCCGGGAATCATCTCGCCGGATCAGTGC
AAAATCGGAATAATGCCGGGAGATATCCACAAGCGAGGAGTGGTGGGCAT
AGTCTCGCGGTCGGGAACCCTGACCTACGAGTCCGTCCATCAGACCACCA
ACGTGGGATTGGGTCAGGCTCTTTGCGTTGGCCTCGGCGGGGATCCCTTT
AACGGAACTAGCTTCATAGACGCCCTCAAAGTGTTTCTGTCCGACAAGGA
GATCAAGGGCATTGTCATGATTGGAGAGATTGGCGGATCCGCCGAGGAAG
AGGCTGCCGATTTCCTTAA
MXO02613.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6255-PA | 1029 | CG6255-RA | 1..761 | 9..769 | 3805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6255-RA | 1188 | CG6255-RA | 103..863 | 9..769 | 3805 | 100 | Plus |
| Scsalpha-RB | 1250 | CG1065-RB | 544..857 | 447..760 | 385 | 74.8 | Plus |
| Scsalpha-RA | 1479 | CG1065-RA | 544..857 | 447..760 | 385 | 74.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19462204..19462964 | 769..9 | 3805 | 100 | Minus |
| 3L | 28110227 | 3L | 3817434..3817699 | 495..760 | 295 | 74.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:46:20 has no hits.
MXO02613.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:14 Download gff for
MXO02613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6255-PA | 1..759 | 9..767 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:01 Download gff for
MXO02613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6255-RA | 97..863 | 1..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:39:44 Download gff for
MXO02613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6255-RA | 97..863 | 1..769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:39:44 Download gff for
MXO02613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19462204..19462970 | 1..769 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:01 Download gff for
MXO02613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15287926..15288692 | 1..769 | 99 | | Minus |
