MXO02614.5prime Sequence
695 bp (607 high quality bases) assembled on 2007-04-10
> MXO02614.5prime
CAGTCGACATGTTCCACTTCAGCGGCTTCAACATGATGTTCCCGGAGGGA
CGCAATTTTCATGCCAACTACAAGTGCTTCTCCGTATCCATGTTGCCAGG
AAACGAGCGAACCGACGTGGAAAAGGGCGGAAAGATTATTATGCCTCCCT
CGGCGCTGGACACGCTCACCCGCCTGAATGTCGAGTATCCAATGCTGTTC
AAGCTGACCAACGTCAAGAAATCGCGATCCTCGCATGCCGGCGTACTCGA
GTTTGTGGCCGACGAGGGCAAATGCTATCTACCCCACTGGATGATGGAAA
ACCTGCTGTTGGGTGAGGGCGACATACTCAACATCGAGAGTGTCTCGCTG
CCGGTGGCCACCTTCTCAAAGTTTCAACCGCACAGCACCGACTTCCTGGA
CATCACCAATCCCAAGGCGGTGCTGGAGAATGCATTGCGCAACTTTGCCT
GCCTCACCAGGGGCGATGTCATAGCCATTAAGTACAACAAGAAGGTCTAC
GAACTGTGTGTCCTGGAGACAAAGCCCGGCAATGCAGTCAGCATCATTGA
GTGCGACATGAATGTGGAATTTGAGGCGCCAGTCGGCTACAAGGATCACT
CCGAAACGCAGGCATCGGGCTCTGGGCAGCAAGGTGCTGCTGGAACTGTT
GGCGGCGAAATCGCTGGAGCCACCAACGCCATACTCGAAGAGGTC
MXO02614.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6233-PA | 951 | Ufd1-like-RA | 1..687 | 9..695 | 3410 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ufd1-like-RA | 1194 | CG6233-RA | 169..855 | 9..695 | 3420 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11122305..11122864 | 695..136 | 2785 | 99.8 | Minus |
| 3L | 28110227 | 3L | 11122922..11123048 | 135..9 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:27:04 has no hits.
MXO02614.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:14 Download gff for
MXO02614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6233-PA | 1..687 | 9..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:01 Download gff for
MXO02614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ufd1-like-RA | 163..855 | 1..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:21 Download gff for
MXO02614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ufd1-like-RA | 163..855 | 1..695 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:21 Download gff for
MXO02614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11122305..11122864 | 136..695 | 99 | <- | Minus |
| 3L | 11122922..11123054 | 1..135 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:01 Download gff for
MXO02614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11115405..11115964 | 136..695 | 99 | <- | Minus |
| arm_3L | 11116022..11116154 | 1..135 | 97 | | Minus |
