MXO02615.5prime Sequence
795 bp (672 high quality bases) assembled on 2007-04-10
> MXO02615.5prime
CAGTCGACATGAGCAGCGCGATCTTCGCCAAGATTGTCCAGCTGGGAGCA
GTATTGCTGGTTTCATTCGTCGCATGGGCGTCAGCTCAGGATTCGGATAT
AGCCAGGACGTGCACTGCCTACAAGAGAAGCGTTTGGGAGGAGACGTCCG
AGTTCAGCTTTCTGATCGAGAACGCTCCGATTATCTACAAGACCCTGGAC
AAATGCACTAGCTATGCGCCGCTCATCATCGGCGGAGGACCCGCCGTGCC
CAAGGAGTTCCCGCATGCTGCGCGCCTGGGACACAAAGATGAGAATGGCG
AGGTGGAATGGTTCTGTGGCGGAACACTTATCAGCGACAGACATGTGCTC
ACCGCAGCGCATTGCCACTACTCACCACAAGGATCAGTGAACATCGCGCG
CCTCGGGGACCTGGAATTCGACACCAACAACGACGATGCGGATCCGGAGG
ACTTCGATGTGAAGGACTTCACCGCGCACCCCGAATTTAGCTACCCGGCG
ATTTACAACGACATTTCCGTGGTACGATTGAGTCGACCCGTAACCTTCAA
CGATTACAAGCATCCGGCCTGTCTACCCTTCGACGATGGGCGATTGGGGA
CCTCCTTCATAGCCATCGGTTGGGGTCAGCTGGAGATCGTGCCCAGGACG
GAGAACAAAAAGCTACAGAAAGTGAACCTCTACAACTATGGAACGCGCTG
CAGGATTACGGCGGATAAAAATGATGAGCTACCCGAGGGATATAATGCTA
CCACCCAACTGTGCATCGGGTCCAACGAACACAAGGACACCTGCA
MXO02615.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11842-PA | 960 | CG11842-RA | 1..787 | 9..795 | 3860 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11842-RA | 1118 | CG11842-RA | 22..808 | 9..795 | 3890 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29053188..29053603 | 380..795 | 2035 | 99.3 | Plus |
3R | 32079331 | 3R | 29052852..29053122 | 109..379 | 1355 | 100 | Plus |
3R | 32079331 | 3R | 29052701..29052800 | 9..108 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:33:16 has no hits.
MXO02615.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:15 Download gff for
MXO02615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-PA | 1..786 | 9..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:45 Download gff for
MXO02615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-RA | 16..807 | 1..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:20 Download gff for
MXO02615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-RA | 16..807 | 1..794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:20 Download gff for
MXO02615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29052695..29052800 | 1..108 | 96 | -> | Plus |
3R | 29052852..29053122 | 109..379 | 100 | -> | Plus |
3R | 29053188..29053602 | 380..794 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:45 Download gff for
MXO02615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24878417..24878522 | 1..108 | 96 | -> | Plus |
arm_3R | 24878574..24878844 | 109..379 | 100 | -> | Plus |
arm_3R | 24878910..24879324 | 380..794 | 99 | | Plus |