Clone MXO02615 Report

Search the DGRC for MXO02615

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:26
Well:15
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG11842-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02615.5prime Sequence

795 bp (672 high quality bases) assembled on 2007-04-10

> MXO02615.5prime
CAGTCGACATGAGCAGCGCGATCTTCGCCAAGATTGTCCAGCTGGGAGCA
GTATTGCTGGTTTCATTCGTCGCATGGGCGTCAGCTCAGGATTCGGATAT
AGCCAGGACGTGCACTGCCTACAAGAGAAGCGTTTGGGAGGAGACGTCCG
AGTTCAGCTTTCTGATCGAGAACGCTCCGATTATCTACAAGACCCTGGAC
AAATGCACTAGCTATGCGCCGCTCATCATCGGCGGAGGACCCGCCGTGCC
CAAGGAGTTCCCGCATGCTGCGCGCCTGGGACACAAAGATGAGAATGGCG
AGGTGGAATGGTTCTGTGGCGGAACACTTATCAGCGACAGACATGTGCTC
ACCGCAGCGCATTGCCACTACTCACCACAAGGATCAGTGAACATCGCGCG
CCTCGGGGACCTGGAATTCGACACCAACAACGACGATGCGGATCCGGAGG
ACTTCGATGTGAAGGACTTCACCGCGCACCCCGAATTTAGCTACCCGGCG
ATTTACAACGACATTTCCGTGGTACGATTGAGTCGACCCGTAACCTTCAA
CGATTACAAGCATCCGGCCTGTCTACCCTTCGACGATGGGCGATTGGGGA
CCTCCTTCATAGCCATCGGTTGGGGTCAGCTGGAGATCGTGCCCAGGACG
GAGAACAAAAAGCTACAGAAAGTGAACCTCTACAACTATGGAACGCGCTG
CAGGATTACGGCGGATAAAAATGATGAGCTACCCGAGGGATATAATGCTA
CCACCCAACTGTGCATCGGGTCCAACGAACACAAGGACACCTGCA

MXO02615.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG11842-PA 960 CG11842-RA 1..787 9..795 3860 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11842-RA 1118 CG11842-RA 22..808 9..795 3890 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29053188..29053603 380..795 2035 99.3 Plus
3R 32079331 3R 29052852..29053122 109..379 1355 100 Plus
3R 32079331 3R 29052701..29052800 9..108 500 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:33:16 has no hits.

MXO02615.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:15 Download gff for MXO02615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11842-PA 1..786 9..794 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:45 Download gff for MXO02615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11842-RA 16..807 1..794 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:20 Download gff for MXO02615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11842-RA 16..807 1..794 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:20 Download gff for MXO02615.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29052695..29052800 1..108 96 -> Plus
3R 29052852..29053122 109..379 100 -> Plus
3R 29053188..29053602 380..794 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:45 Download gff for MXO02615.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24878417..24878522 1..108 96 -> Plus
arm_3R 24878574..24878844 109..379 100 -> Plus
arm_3R 24878910..24879324 380..794 99   Plus