Clone MXO02617 Report

Search the DGRC for MXO02617

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:26
Well:17
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG4692-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02617.5prime Sequence

345 bp (345 high quality bases) assembled on 2007-04-10

> MXO02617.5prime
CAGTCGACATGGCATTCGGTGACTATCCAGCTGAGTACAACCCCAAGGTG
CACGGGCCCTACGACCCCGCTCGCTTCTACGGCAAAGCCGATGTGCCCTT
CGGCCAGGTCAAGCTGGGCGAGATCGGCGCCTGGCTGGGACGCCGCAACA
AGACCCCCAACGCTGTGGCCGGAGCTGTGAGCCGTGCCTGGTGGCGCTGG
CAGCACAAGTACGTGTTCCCAAAGCGCGCCGGGATCGCTCCCTTCTTCCA
GCTGACCGTCGCCAGCATGACGTTCTTCTATCTGATTAACTACACCAAGT
TGAAGCACCACAGGAACTACAAGTACCACGCAAGCTTTCTAGACC

MXO02617.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4692-PB 324 CG4692-RB 1..321 9..329 1605 100 Plus
CG4692-PA 324 CG4692-RA 1..321 9..329 1605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4692-RA 591 CG4692-RA 103..423 9..329 1605 100 Plus
CG4692-RB 548 CG4692-RB 60..380 9..329 1605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24599256..24599499 329..86 1220 100 Minus
4 1348131 4 976898..977091 129..322 820 94.8 Plus
2R 25286936 2R 24599617..24599695 87..9 395 100 Minus
4 1348131 4 976824..976900 13..89 325 94.8 Plus
Blast to na_te.dros performed on 2014-11-28 22:27:48 has no hits.

MXO02617.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:16 Download gff for MXO02617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4692-PA 1..324 9..333 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:50 Download gff for MXO02617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4692-RB 56..385 1..335 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:49 Download gff for MXO02617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4692-RB 56..385 1..335 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:49 Download gff for MXO02617.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24599251..24599497 88..335 99 <- Minus
2R 24599617..24599702 1..87 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:50 Download gff for MXO02617.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20486774..20487020 88..335 99 <- Minus
arm_2R 20487140..20487225 1..87 96   Minus