MXO02618.5prime Sequence
868 bp (662 high quality bases) assembled on 2007-04-10
> MXO02618.5prime
CAGTCGACATGTCATTTTCCGCCATCGGTGATTGCCAACTAATTTCGCAA
TTATACCAGTACAAGAAGCACCGCGTCATCTGCAGCGTCAAAGTTCTGCC
GACACCTGTGACCCATTTTGAGCGGGAATCCAAGAATGATTTCCATTGGA
TGACCGCGGATCGGTGGAGCCGGATTGAGTGTGGTCTATGGCGCCTGTTC
GAGAACCTGAAGCAGTGGCAGGATGCCTACCAACTGGACACCGAGCTCAT
TATCGATCACATCATCGTGCGCGTCCAGGCGACCAATAAGTCGCATCCTG
CAACGGTCGCTCTTCTGGCCGGTACGGAGTCCAGCTCCAAGGATCTCTGC
CTGGACCTACAGCTGCAGTACATAACACAAGAGGACACCACCATTGTGGA
CGTCATTCCCGCCAAGCGCGAGCTTGCCACGGAAGCAGAAACAAATGGCA
CCAGACCCACATCCCGCAAGATCCGCGTAGCAAACTCAGGATCCAAGCCA
AAAGCGGGCACACAATCGAAGCCCAAGCACATTGACGCCGACAACGAGGA
TGACAAGAGCTCCACCACGGCCAGCCAACCAACCAAGATCAAGAGCGAGC
GCAGGTCCATTTCCCAAGGAGGCGAAAAGGATAAGGCTTCTTCCAGCAGC
CCCAGTTCCTCGCAGCAGAGCAACCGCATTAAGCGATCGCACAGTCCATC
ACAGCAGAATTCCAGATCCAGCTCCGTTGAGGCCAAGCCTGCACGCCGCT
CCGGCCGATCGCCCATACGCCCGAGTCGATTCAAAAACTTCGTAGTTGGC
GAGACCAGGAGCGGCAAGAGCAGAGGACCCAAGCCCAAAGTGAAACGAGT
ATCGCCAGTGCCGGCCAA
MXO02618.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4951-PA | 963 | CG4951-RA | 1..860 | 9..868 | 4300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4951-RB | 1591 | CG4951-RB | 61..920 | 9..868 | 4300 | 100 | Plus |
CG4951-RA | 1074 | CG4951-RA | 61..920 | 9..868 | 4300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27953498..27953949 | 508..57 | 2260 | 100 | Minus |
3R | 32079331 | 3R | 27953143..27953342 | 707..508 | 1000 | 100 | Minus |
3R | 32079331 | 3R | 27952993..27953085 | 799..707 | 465 | 100 | Minus |
3R | 32079331 | 3R | 27952856..27952925 | 868..799 | 350 | 100 | Minus |
3R | 32079331 | 3R | 27954002..27954052 | 59..9 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:30:56 has no hits.
MXO02618.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:16 Download gff for
MXO02618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-PA | 1..858 | 9..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:41 Download gff for
MXO02618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-RA | 61..918 | 9..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:20 Download gff for
MXO02618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-RA | 61..918 | 9..866 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:20 Download gff for
MXO02618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27952858..27952924 | 800..866 | 100 | <- | Minus |
3R | 27952993..27953085 | 707..799 | 100 | <- | Minus |
3R | 27953144..27953341 | 509..706 | 100 | <- | Minus |
3R | 27953498..27953946 | 60..508 | 100 | <- | Minus |
3R | 27954002..27954052 | 9..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:41 Download gff for
MXO02618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23778580..23778646 | 800..866 | 100 | <- | Minus |
arm_3R | 23778715..23778807 | 707..799 | 100 | <- | Minus |
arm_3R | 23778866..23779063 | 509..706 | 100 | <- | Minus |
arm_3R | 23779220..23779668 | 60..508 | 100 | <- | Minus |
arm_3R | 23779724..23779774 | 9..59 | 100 | | Minus |