MXO02620.5prime Sequence
843 bp (787 high quality bases) assembled on 2007-04-10
> MXO02620.5prime
CAGTCGACATGTGGAAGGTTCTACTTATTTGTGTGGTGATGAGTGCTCTG
AATGAAGAGTCATCGGGAGCAAAAACGGCTCCGACCCGCAGACGACGAGC
ATATGCCGGCGGTTACGCCGGAGGGTATGCCAGCAGTGGAGGAGGAGCCG
GTGGCTATACGGGAAGCTATAACAGTGGCGGTGGACACAGCAGCTATGTG
GGTACCGGTGGTGGTGGCGGTAGTGGCTATTACGATTACGATGACTATGG
CGGCACTTCACCCAACTTTGGCATCATCGATCCGTATCTATTCCACCAGC
AGCTGACGAATCATATTTTGGCCCAGAACTTCGCCAACCAACAAGCTATA
ACTGGTCTGGCCACGGCTGGCAATGCTTATGCATCCGCGGATGCATCTCT
TGTCAACGACAACGATATTCGCATCCAGCAACAGATCGCCGCTCAACAGG
CCTACCACGACAATCTAGTGCGCCAGAATCGGTACAGAGGAGGCACCAGC
TCTAGCTTCAGTTCCAGCTCTGGATCCGGGTCTGGATCTGGATCGGGATC
CTACAACTCACATCGCTATGCACCCAGCTATGCATCAGCTTCCGGATCTA
TCGGTTCCAATGGCTATCGCCAGACGGCCTTCATTAGCCCATCCAATCCG
GCCTCTCCCAACATTGTGAATCGCTTTGGCGGCGGAAGCGGTGGTGGATC
CTCGTTCTCCAGCTCCAGCAGCTCCGGAGGAGGTGGTGGCAGCGGTGGTG
GCTACAAGGGCGTCTCGGTCTCGTCCTTCAGCCACAGCAACGGAGACGGA
ACCAGTCGACGTGGAGCCCAGACCACGGTCAACGACNACGGAA
MXO02620.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17549-PA | 864 | CG17549-RA | 1..835 | 9..843 | 4156 | 99.8 | Plus |
CG17549-PB | 789 | CG17549-RB | 336..760 | 419..843 | 2106 | 99.7 | Plus |
CG17549-PC | 789 | CG17549-RC | 336..760 | 419..843 | 2106 | 99.7 | Plus |
CG17549-PB | 789 | CG17549-RB | 1..335 | 9..343 | 1675 | 100 | Plus |
CG17549-PC | 789 | CG17549-RC | 1..335 | 9..343 | 1675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17549-RD | 1159 | CG17549-RD | 176..1010 | 9..843 | 4164 | 99.9 | Plus |
CG17549-RA | 1054 | CG17549-RA | 71..905 | 9..843 | 4164 | 99.9 | Plus |
CG17549-RE | 979 | CG17549-RE | 406..830 | 419..843 | 2114 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19388040..19388315 | 343..68 | 1380 | 100 | Minus |
2L | 23513712 | 2L | 19387537..19387769 | 651..419 | 1165 | 100 | Minus |
2L | 23513712 | 2L | 19387199..19387392 | 843..650 | 959 | 99.5 | Minus |
2L | 23513712 | 2L | 19387862..19387936 | 418..344 | 375 | 100 | Minus |
2L | 23513712 | 2L | 19388474..19388534 | 69..9 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:31:04 has no hits.
MXO02620.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:17 Download gff for
MXO02620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17549-PA | 1..833 | 9..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:45 Download gff for
MXO02620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17549-RA | 71..905 | 9..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:25 Download gff for
MXO02620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17549-RA | 71..905 | 9..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:25 Download gff for
MXO02620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19387199..19387391 | 651..843 | 99 | <- | Minus |
2L | 19387538..19387769 | 419..650 | 100 | <- | Minus |
2L | 19387862..19387936 | 344..418 | 100 | <- | Minus |
2L | 19388040..19388313 | 70..343 | 100 | <- | Minus |
2L | 19388474..19388534 | 9..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:45 Download gff for
MXO02620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19387199..19387391 | 651..843 | 99 | <- | Minus |
arm_2L | 19387538..19387769 | 419..650 | 100 | <- | Minus |
arm_2L | 19387862..19387936 | 344..418 | 100 | <- | Minus |
arm_2L | 19388040..19388313 | 70..343 | 100 | <- | Minus |
arm_2L | 19388474..19388534 | 9..69 | 100 | | Minus |