Clone MXO02620 Report

Search the DGRC for MXO02620

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:26
Well:20
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG17549-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02620.5prime Sequence

843 bp (787 high quality bases) assembled on 2007-04-10

> MXO02620.5prime
CAGTCGACATGTGGAAGGTTCTACTTATTTGTGTGGTGATGAGTGCTCTG
AATGAAGAGTCATCGGGAGCAAAAACGGCTCCGACCCGCAGACGACGAGC
ATATGCCGGCGGTTACGCCGGAGGGTATGCCAGCAGTGGAGGAGGAGCCG
GTGGCTATACGGGAAGCTATAACAGTGGCGGTGGACACAGCAGCTATGTG
GGTACCGGTGGTGGTGGCGGTAGTGGCTATTACGATTACGATGACTATGG
CGGCACTTCACCCAACTTTGGCATCATCGATCCGTATCTATTCCACCAGC
AGCTGACGAATCATATTTTGGCCCAGAACTTCGCCAACCAACAAGCTATA
ACTGGTCTGGCCACGGCTGGCAATGCTTATGCATCCGCGGATGCATCTCT
TGTCAACGACAACGATATTCGCATCCAGCAACAGATCGCCGCTCAACAGG
CCTACCACGACAATCTAGTGCGCCAGAATCGGTACAGAGGAGGCACCAGC
TCTAGCTTCAGTTCCAGCTCTGGATCCGGGTCTGGATCTGGATCGGGATC
CTACAACTCACATCGCTATGCACCCAGCTATGCATCAGCTTCCGGATCTA
TCGGTTCCAATGGCTATCGCCAGACGGCCTTCATTAGCCCATCCAATCCG
GCCTCTCCCAACATTGTGAATCGCTTTGGCGGCGGAAGCGGTGGTGGATC
CTCGTTCTCCAGCTCCAGCAGCTCCGGAGGAGGTGGTGGCAGCGGTGGTG
GCTACAAGGGCGTCTCGGTCTCGTCCTTCAGCCACAGCAACGGAGACGGA
ACCAGTCGACGTGGAGCCCAGACCACGGTCAACGACNACGGAA

MXO02620.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG17549-PA 864 CG17549-RA 1..835 9..843 4156 99.8 Plus
CG17549-PB 789 CG17549-RB 336..760 419..843 2106 99.7 Plus
CG17549-PC 789 CG17549-RC 336..760 419..843 2106 99.7 Plus
CG17549-PB 789 CG17549-RB 1..335 9..343 1675 100 Plus
CG17549-PC 789 CG17549-RC 1..335 9..343 1675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17549-RD 1159 CG17549-RD 176..1010 9..843 4164 99.9 Plus
CG17549-RA 1054 CG17549-RA 71..905 9..843 4164 99.9 Plus
CG17549-RE 979 CG17549-RE 406..830 419..843 2114 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19388040..19388315 343..68 1380 100 Minus
2L 23513712 2L 19387537..19387769 651..419 1165 100 Minus
2L 23513712 2L 19387199..19387392 843..650 959 99.5 Minus
2L 23513712 2L 19387862..19387936 418..344 375 100 Minus
2L 23513712 2L 19388474..19388534 69..9 305 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:31:04 has no hits.

MXO02620.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:17 Download gff for MXO02620.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17549-PA 1..833 9..841 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:45 Download gff for MXO02620.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17549-RA 71..905 9..843 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:25 Download gff for MXO02620.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17549-RA 71..905 9..843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:25 Download gff for MXO02620.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19387199..19387391 651..843 99 <- Minus
2L 19387538..19387769 419..650 100 <- Minus
2L 19387862..19387936 344..418 100 <- Minus
2L 19388040..19388313 70..343 100 <- Minus
2L 19388474..19388534 9..69 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:45 Download gff for MXO02620.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19387199..19387391 651..843 99 <- Minus
arm_2L 19387538..19387769 419..650 100 <- Minus
arm_2L 19387862..19387936 344..418 100 <- Minus
arm_2L 19388040..19388313 70..343 100 <- Minus
arm_2L 19388474..19388534 9..69 100   Minus