MXO02638.5prime Sequence
615 bp (615 high quality bases) assembled on 2007-04-10
> MXO02638.5prime
CAGTCGACATGCTGCGACCTCTGTTGACCGTTGCCCTTGTACTTTTCGGC
TTTTCCTCGGCCATTTTGGCCGGTCGTCTTAGCCAACGGTATTTGCCCAC
TCCGCAGGCGAGTCAGCTGCACTACCATGGTGTAAGTGGCCAAGGACAGG
CTCGTCCTGGCGCAGGACATTCCTTTGGAGGCGGCTCCAGCTACCAGCGA
CAGCAACAACCACAAATTCCCATCGTTAGGAGCGATTATAACAGCGACGC
CAATGGCAACTACAACTTCGGTTTTGACACTGGTAATGGTATTCACCGCG
ATGAGACCGGTGAGTTCCGCGGTGGTTGGCCCCACGGATCGCTGGGCGTC
CAGGGATCCTACTCATACACTGGGGATGATGGCAAGCAGTACACGGTGAA
CTACACGGCCGATAAGAACGGATTCCATGCCGAAGGTGCCCATCTACCCG
TTTCGCCCTCGGTTCCCGCTGCTCCAGCTGGACGCAGCTCTTATGGCGCT
GGTGGATCTGGCTACCGTGGATCGGCTTCATCGCATGTCCCAGCTGCTGC
TCCTGCCACCCGATATCTGCCACCAGGATATCGCCAGCGCAGGCACTACG
CAAGCTTTCTAGACC
MXO02638.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:11:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2555-PA | 594 | CG2555-RA | 1..591 | 9..599 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr11B-RA | 818 | CG2555-RA | 125..715 | 9..599 | 2955 | 100 | Plus |
| Cpr11B-RB | 812 | CG2555-RB | 125..709 | 9..599 | 2855 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12553248..12553510 | 9..271 | 1315 | 100 | Plus |
| X | 23542271 | X | 12553621..12553831 | 271..481 | 1055 | 100 | Plus |
| X | 23542271 | X | 12554014..12554132 | 481..599 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:57:14 has no hits.
MXO02638.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:23 Download gff for
MXO02638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2555-PA | 1..594 | 9..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:59 Download gff for
MXO02638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr11B-RA | 118..719 | 1..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:04 Download gff for
MXO02638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr11B-RA | 118..719 | 1..604 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:04 Download gff for
MXO02638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12553241..12553510 | 1..271 | 98 | -> | Plus |
| X | 12553622..12553831 | 272..481 | 100 | -> | Plus |
| X | 12554015..12554136 | 482..604 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:59 Download gff for
MXO02638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12447274..12447543 | 1..271 | 98 | -> | Plus |
| arm_X | 12447655..12447864 | 272..481 | 100 | -> | Plus |
| arm_X | 12448048..12448169 | 482..604 | 98 | | Plus |
