MXO02640.5prime Sequence
917 bp (834 high quality bases) assembled on 2007-04-10
> MXO02640.5prime
CAGTCGACATGTGTCCGTCAAAATTTGTTGTCTACATACTGCTGATTTCC
GTAAGCGCCAATTCGAACTCGGAATCACAGGCGGGCCAGCTGCATTCGGC
GCCCAGTCAGAGGCAGGACCGACCATCGGACTTTCAGTTCCTGGTCACTG
GTGGCTATCGACCGGATACCAACGACCTGGTCAAGTACACGGTTTCGCTG
CGCATGGGCAAGCCGAAGAAGTTCTTCGGCGATAACCACTTTTGCGCGGG
AACGATCTTCAGCGAGCGGGCCATTCTCACGGCGGCCCATTGCATGTTCA
GCAATCGGCGAAAGCTGAAGGCCAAGAAGTTGATGGTCGTTGCCGGGACG
CCAAGGAGGCTGCTCAAGAGCATTACAACACACATTATTGAGGCCGAGGA
GCTATTGCCGCATCCCAAGTACAAGAAGGGCAAGTCGCAGAAGTACGACA
TAGGATTGATTCTGTTGGAGGCGGATCTCAGTCTGGGTGATGCCGTTGCC
AAAATACCTCTGTACAACAAGGTTCCGGTGGCCGGGGCCCCGTGCTCCAT
CGTCGGCTGGGGCACGGTCATTCAGTTCGGACCACTGCCAGATGAGGCCA
TCAACGGCGATATGCAGATCCTGCCGGACACCTTCTGCGAGAAGCTGCTG
GGCTGGTCCAACGCTGGCATGCTCTGCGCCAATGACAAGCACGACTCCGA
TGTGGACAGCTGCCAGGGCGACTCGGGCGGGCCCCTCATCTGTGACAACA
TGGTGACGGGCATCGTGTCCTTCGGAATGGGTTGCGGCGAGCCTGATTCG
GCTGGGATCTACACCGATGTCTACCACTTCCGGGATTGGATCACCGAGAA
CTCCTGCCCCCTAGGCACACGGTCCCGTGTGGACGCTGTTTCTGCTGCTG
CTGCTCCTGCTCACTGG
MXO02640.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:11:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3795-PA | 918 | CG3795-RA | 1..908 | 9..917 | 4455 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3795-RB | 1247 | CG3795-RB | 47..954 | 9..917 | 4490 | 99.7 | Plus |
| CG3795-RA | 1115 | CG3795-RA | 47..954 | 9..917 | 4490 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1709099..1709442 | 917..573 | 1675 | 99.7 | Minus |
| X | 23542271 | X | 1709841..1710136 | 304..9 | 1480 | 100 | Minus |
| X | 23542271 | X | 1709505..1709775 | 575..305 | 1325 | 99.3 | Minus |
Blast to na_te.dros performed 2014-11-28 22:28:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2370 | 911..885 | 108 | 88.9 | Minus |
MXO02640.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:24 Download gff for
MXO02640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3795-PA | 1..908 | 9..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:59 Download gff for
MXO02640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3795-RA | 19..935 | 1..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:55 Download gff for
MXO02640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3795-RA | 38..954 | 1..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:55 Download gff for
MXO02640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1709099..1709439 | 576..917 | 99 | <- | Minus |
| X | 1709505..1709775 | 305..575 | 99 | <- | Minus |
| X | 1709841..1710143 | 1..304 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:59 Download gff for
MXO02640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1603132..1603472 | 576..917 | 99 | <- | Minus |
| arm_X | 1603538..1603808 | 305..575 | 99 | <- | Minus |
| arm_X | 1603874..1604176 | 1..304 | 98 | | Minus |
