MXO02641.5prime Sequence
810 bp (765 high quality bases) assembled on 2007-04-10
> MXO02641.5prime
CAGTCGACATGGCCATTAAGTGTCTGATTTTGCTTACTTCCCTGCTGGGA
ATAAGCCTTGCAGCGGACTATTGTGCTCTGCCCACGTGCCTGGACAAGCA
CATAGCCTGCAACAACAAGGGAAATTTCAGTGAAAATTGTCCCAAGGACG
TGCGTGAGGTGAAGATCGAGCCGCATCACAAACTCATCCTCAATCTCTTC
AACGAGCTGCGCAACAACGTGGCTGGAGGCAAAATAGAAGGACTACCCAA
GGCTGTTCGCATGGCCAAGATGTCCTGGTGCGAGGAGCTCTCCCATCTGG
CCTTGCTGAACGTAAAGACCTGTGAGTCCCTGCCAGATAAATGTCGCAGC
ACCGAGAGATTCGCCTACGCCGGCCAGAACAACGCCTTGTTCCAGTACAG
CGGAGCCGAGACAGAGTACACCGATGCGGAAATAATAAAGGAGCAGATCG
AGAACTGGTTTGCTGAGCGCTCGAATGCATCTCCCGAGATCCTCGCCAGC
TTCCCGGAGGAGCTTCCCAACAAGGCGGTGACCAAGTTCACCATCGCGGT
GGCCGAGAAGAACACCCATGTGGGATGTGCGGCCGTGCGCTTCTCCCGGG
ACTTTTANCACCACTTCGTACTCACCTGCAACTTCGCCACATCGAACATT
GTGGGTCAGCCTGTCTACACTCCGGGAGAGAANGCAACCACCGGCTGCAA
GAACCGATATGGAGCTGCCTACGACTACCCCAATCTGTGCTACGCCAAGG
AGATCTACGACAACGAGAAGGTCATCGAGAACACACAGACGATGGCAAGC
TTTCTAGACC
MXO02641.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:11:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17210-PA | 789 | scpr-B-RA | 1..786 | 9..794 | 3867 | 99.6 | Plus |
| CG5106-PA | 789 | scpr-C-RA | 1..786 | 9..794 | 3617 | 98.3 | Plus |
| CG5207-PA | 795 | scpr-A-RA | 103..792 | 105..794 | 3062 | 97.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scpr-B-RA | 898 | CG17210-RA | 13..798 | 9..794 | 3893 | 99.6 | Plus |
| scpr-C-RB | 1109 | CG5106-RB | 17..802 | 9..794 | 3743 | 98.3 | Plus |
| scpr-C-RA | 910 | CG5106-RA | 17..802 | 9..794 | 3743 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11240141..11240812 | 794..123 | 3323 | 99.6 | Minus |
| 3R | 32079331 | 3R | 11225703..11226374 | 123..794 | 3188 | 98.2 | Plus |
| 3R | 32079331 | 3R | 11241384..11242052 | 126..794 | 3143 | 97.9 | Plus |
| 3R | 32079331 | 3R | 11240866..11240979 | 122..9 | 570 | 100 | Minus |
| 3R | 32079331 | 3R | 11225536..11225649 | 9..122 | 555 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:27:20 has no hits.
MXO02641.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:25 Download gff for
MXO02641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17210-PA | 1..789 | 9..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:05 Download gff for
MXO02641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scpr-B-RA | 13..798 | 9..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:29 Download gff for
MXO02641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scpr-B-RA | 13..798 | 9..794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:29 Download gff for
MXO02641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11240141..11240812 | 123..794 | 99 | <- | Minus |
| 3R | 11240866..11240979 | 9..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:05 Download gff for
MXO02641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7065863..7066534 | 123..794 | 99 | <- | Minus |
| arm_3R | 7066588..7066701 | 9..122 | 100 | | Minus |
