MXO02642.5prime Sequence
633 bp (599 high quality bases) assembled on 2007-04-10
> MXO02642.5prime
CAGTCGACATGTCCAAGTACTTATCTGTCCTACTGCTGTCCGCGGCACTC
GTTGGAGCTGCCAAGCCGGAAGATAATGAATCGTGCTATTCCTTCGCCGG
CGGCTCCGTTTATCCCGACCAGCCGAAGGGCGACCATCAGCTGCAGTACA
CCAAGGCAGTCATTTCCAAGCCAGCTCCGCAGTTCGAGGGCACCGCCGTG
GTTAATAAGGAGATTGTGAAGCTATCATTGTCCCAATATCTAGGGAAATA
TGTGGTGCTACTCTTCTACCCACTGGACTTCACCTTTGTATGCCCAACGG
AGATCATTGCCTTCTCCGACCGCATCGCCGAGTTCAAGAAGATCAAGACC
GAGGTGATTGGCGTCAGCGTGGACTCGCACTTCACCCACTTGGCCTGGAT
AAACACGCCGCGCAAGGAGGGCGGCCTGGGCGACGTGAAGATCCCACTGC
TCTCCGATCTAACGCATAAGATCAGCAAGGACTACGGAGTCTACTTGGAG
TCCAGCGGTCATGCGCTGCGCGGTCTCTTCATTATCGATCAGACCGGAGT
GCTGCGACAGATCACCATGAATGATTTGCCCGTGGGACGCTCTGTGGACG
ATACTATTCGTCTGGTTCATGCCTTCCAGTATA
MXO02642.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:11:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1274-PA | 729 | Jafrac2-RA | 1..625 | 9..633 | 3050 | 99.5 | Plus |
| CG1274-PB | 729 | Jafrac2-RB | 1..625 | 9..633 | 3050 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jafrac2-RC | 1007 | CG1274-RC | 59..684 | 8..633 | 3085 | 99.5 | Plus |
| Jafrac2-RB | 1178 | CG1274-RB | 230..855 | 8..633 | 3085 | 99.5 | Plus |
| Jafrac2-RA | 1047 | CG1274-RA | 99..724 | 8..633 | 3085 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3043441..3043793 | 281..633 | 1735 | 99.4 | Plus |
| 3L | 28110227 | 3L | 3043051..3043205 | 8..162 | 775 | 100 | Plus |
| 3L | 28110227 | 3L | 3043272..3043389 | 163..280 | 575 | 99.2 | Plus |
| X | 23542271 | X | 13331215..13331420 | 246..451 | 340 | 77.7 | Plus |
| 3L | 28110227 | 3L | 26352859..26352919 | 8..68 | 245 | 93.4 | Plus |
| 3L | 28110227 | 3L | 26617408..26617468 | 8..68 | 245 | 93.4 | Plus |
| 3L | 28110227 | 3L | 26623291..26623351 | 8..68 | 245 | 93.4 | Plus |
| 3L | 28110227 | 3L | 27065954..27066014 | 8..68 | 245 | 93.4 | Plus |
| 3L | 28110227 | 3L | 26297190..26297250 | 8..68 | 245 | 93.4 | Plus |
| 3CEN | 744266 | 3CEN | 543958..544018 | 68..8 | 245 | 93.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:27:28 has no hits.
MXO02642.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:25 Download gff for
MXO02642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1274-PB | 1..624 | 9..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:07 Download gff for
MXO02642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jafrac2-RA | 95..723 | 1..632 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:32 Download gff for
MXO02642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jafrac2-RA | 95..723 | 1..632 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:32 Download gff for
MXO02642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3043441..3043792 | 281..632 | 99 | | Plus |
| 3L | 3043042..3043205 | 1..162 | 97 | -> | Plus |
| 3L | 3043272..3043389 | 163..280 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:07 Download gff for
MXO02642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3043042..3043205 | 1..162 | 97 | -> | Plus |
| arm_3L | 3043272..3043389 | 163..280 | 99 | -> | Plus |
| arm_3L | 3043441..3043792 | 281..632 | 99 | | Plus |
