MXO02649.5prime Sequence
869 bp (661 high quality bases) assembled on 2007-04-10
> MXO02649.5prime
CAGTCGACATGGAGGGCAAGACAGTCATTATCACAGGCGCCAACAGCGGA
ATTGGCAAGGAGACGGCCAAGGATCTGGCTGGACGTGGAGCCCGCATCAT
CATGGCCTGCAGGAACCTGGAGACTGCCAATGCAGTGAAGGATGAGATCG
TCAAGGAGACGAAGAACAACAAGATCCTAGTCAAGAAACTGGATCTGGGC
TCCCAGAAGTCCGTCCGTGAGTTCGCCGCTGACATTGTGAAGACCGAGCC
CAAGATCGATGTGCTTATCCACAATGCCGGCATGGCTCTGGCCTTCCGCG
GACAGACGAGTGAGGATGGCGTGGAGCTGACCATGGCCACCAATCACTAT
GGACCCTTCCTGCTGACGCATCTGCTCATCGATGTACTAAAGAAGAGCGC
GCCGGCTCGCATAGTCATCGTAGCCTCGGAGCTGTACCGCCTGTCGTCGG
TTAACCTGGCCAAGCTCAATCCCATCGGCACTTTCCCGGCTGCCTACTTA
TACTATGTGTCCAAGTTTGCGAACATCTACTTTGCCCGGGAGCTGGCCAA
GCGGCTGGAGGGCACCAAGGTTACAGTGAATTTCCTGCATCCCGGCATGA
TCGACTCGGGCATTTGGCGTAACGTTCCCTTCCCCCTCAACTTGCCCATG
ATGGCCATCACCAAGGGATTCTTCAAGACCACCAAGGCCGGCGCCCAGAC
CACTATCTATTTGGCCACATCCAATGAGGTGGCCAATGTGTCTGGAAAGT
ACTTCATGGACTGCAAGGAGGCCACCCTTAATGCTGCTGCCCTCGATGAG
GAGAAGGGTCTCAAGATCTGGGAGGAGTCCGTGAAGATTGTCAAGCTTAC
GCCCCAGGATCCCAAAATC
MXO02649.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:12:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7675-PA | 864 | CG7675-RA | 1..861 | 9..869 | 4305 | 100 | Plus |
| CG7675-PB | 1011 | CG7675-RB | 148..1008 | 9..869 | 4305 | 100 | Plus |
| CG7675-PC | 864 | CG7675-RC | 1..861 | 9..869 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7675-RE | 1101 | CG7675-RE | 125..985 | 9..869 | 4305 | 100 | Plus |
| CG7675-RD | 1224 | CG7675-RD | 248..1108 | 9..869 | 4305 | 100 | Plus |
| CG7675-RC | 1082 | CG7675-RC | 106..966 | 9..869 | 4305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18378240..18378968 | 869..141 | 3645 | 100 | Minus |
| 3R | 32079331 | 3R | 18379226..18379358 | 141..9 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:48:41 has no hits.
MXO02649.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:28 Download gff for
MXO02649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-PC | 1..861 | 9..869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:06 Download gff for
MXO02649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-RA | 142..1011 | 1..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:52 Download gff for
MXO02649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-RC | 97..966 | 1..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:52 Download gff for
MXO02649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18378240..18378967 | 142..869 | 100 | <- | Minus |
| 3R | 18379226..18379367 | 1..141 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:06 Download gff for
MXO02649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14203962..14204689 | 142..869 | 100 | <- | Minus |
| arm_3R | 14204948..14205089 | 1..141 | 97 | | Minus |
