MXO02652.5prime Sequence
621 bp (615 high quality bases) assembled on 2007-04-10
> MXO02652.5prime
CAGTCGACATGTCTTATGGACAACGCTATAACCCGTATGCCCAGCCCGGT
GGTGGCTATGCCCCGCCGCCAGGAGCATTTCCGCCGCAGAATGCCCAGGT
GTCTCCGCAGGCACAGCAATGGTTCTCCATGGTGGACCGCGACCGATCTG
GAAAGATAAACGCTTCCGAGTTGCAGGCGGCCCTGGTGAATGGGCGTGGC
GATCACTTCTCGGATAATGCCTGCAAGCTGATGATAAGCATGTTCGACAA
CGACGCCAGTGGTACCATCGATATCTATGAGTTCGAGAAGCTCTACAACT
ACATCAACCAATGGCTGCTTTTCTTCAAGACCTACGATCAGGACTCCTCT
GGACATATCGAGGAACAGGATTTTTTTCCCCCCCCCCCCCAGATGGGCTT
TCGATTCTAAAAAAAATTCATAAACTTCCTGGTGAAGAAGAGCGACCCCC
AGGGCCACAAAGAGGTGTCCGTGGATCAGTTCATAGTGCTCTGCGTGCAG
GTGCAGCGTTTCACGGAGGCCTTCAGGCAGCGCGACACCCAGCAGAATGG
AACCATCACCATTGGGTTCGAGGACTTCCTCACCGTGGCCATTGGCTGCT
CGTATGCAAGCTTTCTAGACC
MXO02652.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:13:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17765-PA | 600 | CG17765-RA | 1..310 | 9..318 | 1525 | 99.6 | Plus |
| CG17765-PA | 600 | CG17765-RA | 407..597 | 415..605 | 955 | 100 | Plus |
| CG17765-PA | 600 | CG17765-RA | 314..362 | 322..370 | 245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:52:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17765-RA | 989 | CG17765-RA | 93..689 | 9..605 | 2655 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:52:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10480323..10480543 | 18..238 | 1090 | 99.5 | Plus |
| 2R | 25286936 | 2R | 10481369..10481586 | 388..605 | 1000 | 97.2 | Plus |
| 2R | 25286936 | 2R | 10481090..10481169 | 238..317 | 400 | 100 | Plus |
| 2R | 25286936 | 2R | 10481231..10481279 | 322..370 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:52:39 has no hits.
MXO02652.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:30 Download gff for
MXO02652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17765-PA | 1..600 | 9..608 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:08 Download gff for
MXO02652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17765-RA | 93..695 | 9..610 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:47 Download gff for
MXO02652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17765-RA | 93..695 | 9..610 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:47 Download gff for
MXO02652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10480323..10480542 | 18..237 | 99 | -> | Plus |
| 2R | 10481090..10481169 | 238..317 | 100 | -> | Plus |
| 2R | 10481227..10481279 | 318..370 | 94 | -> | Plus |
| 2R | 10481351..10481592 | 371..610 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:08 Download gff for
MXO02652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6367828..6368047 | 18..237 | 99 | -> | Plus |
| arm_2R | 6368595..6368674 | 238..317 | 100 | -> | Plus |
| arm_2R | 6368732..6368784 | 318..370 | 94 | -> | Plus |
| arm_2R | 6368856..6369097 | 371..610 | 92 | | Plus |
