MXO02653.5prime Sequence
903 bp (572 high quality bases) assembled on 2007-04-10
> MXO02653.5prime
CAGTCGACATGAACAGTCCTCTCGGGATCACTGCCCTAATTTGGGGCATT
CTCTGCCTTAGCTGTCCACCTTCTTCTCAAGCCGGAAGGGAAGATTGGAC
ACCACACGAGCTTCTGGCTTACGAACAGTTGACACAACAGGATTGCGGTG
TCCTATCGAATCTGATTCCCGCCCAAAGGCTTCGACGGCGGATCACCGGC
GGCAGGAAATCTTCGCTGTTGTCCCAGCCTTGGATGGCTTTTCTCCACAT
TTCCGGTGATATAGAGATGTGCCGCTGTGGAGGCTCTCTTCTCTCAGAAC
TCTTTGTTTTGACTGCCGCGCACTGCTTCAAAATGTGTCCCCGATCTAAG
GAGATAAGAGTGTGGCTGGGAGAGCTCGACATTAGTTCCACAAGTGACTG
CGTCACCTACAATTATCAACGGGTTTGCGCACTGCCCGTGGAGGAGTTTA
CCATCGACAAGTGGATTCTTCACGAGGAGTTTAACCTCTTCTATCCCGGG
TATGATATTGCTCTGATAAAACTAAACAAGAAAGTGGTCTTTAAAGATCA
CATACGACCCATATGTCTACCCCTGGACGGATGAACTCTTGGCGTTTACC
TTGCAGCTGGGACAATCCTACATGGCTGTGGGCTGGGGGAGAACGGAAAG
TCCGCGCTTCCCCAACAGTACAATGGAGGTCCATATAAACACTGAGAAGT
GCACCGACGGCAGGGATACTTCCTTCCTTTGCGCCAATGGAGATTATGTG
GACACGTGCACTGGGGACTCCGGTGGACCGCTCATATGGAAGACCACGTT
GTTTGGCAAGGCTCGAACCGTACAATTTGGTGTGGTCAGCACTGGGAGCC
AAAACTGCGGTGCTGGTCAGAAGGCCTACTACATGGATGTACCCACCTAT
GTG
MXO02653.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:13:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1773-PA | 954 | CG1773-RA | 1..894 | 9..903 | 4360 | 99.5 | Plus |
| CG30002-PA | 612 | CG30002-RA | 329..567 | 662..900 | 845 | 94.1 | Plus |
| CG30002-PA | 612 | CG30002-RA | 250..305 | 583..638 | 180 | 92.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1773-RA | 1123 | CG1773-RA | 25..919 | 8..903 | 4410 | 99.6 | Plus |
| CG30002-RB | 1572 | CG30002-RB | 23..914 | 8..900 | 3165 | 90.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9707019..9707376 | 545..903 | 1700 | 98.9 | Plus |
| 2R | 25286936 | 2R | 9706291..9706583 | 8..300 | 1465 | 100 | Plus |
| 2R | 25286936 | 2R | 9705135..9705489 | 545..900 | 1280 | 91.3 | Plus |
| 2R | 25286936 | 2R | 9706755..9706948 | 353..546 | 970 | 100 | Plus |
| 2R | 25286936 | 2R | 9704871..9705064 | 353..546 | 835 | 95.4 | Plus |
| 2R | 25286936 | 2R | 9704406..9704698 | 8..300 | 775 | 84.3 | Plus |
| 2R | 25286936 | 2R | 9704755..9704807 | 301..353 | 265 | 100 | Plus |
| 2R | 25286936 | 2R | 9706640..9706692 | 301..353 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:47:03 has no hits.
MXO02653.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:30 Download gff for
MXO02653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1773-PA | 1..894 | 9..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:57 Download gff for
MXO02653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1773-RA | 15..919 | 1..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:40 Download gff for
MXO02653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1773-RA | 15..919 | 1..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:40 Download gff for
MXO02653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9706281..9706583 | 1..300 | 98 | -> | Plus |
| 2R | 9706640..9706691 | 301..352 | 100 | -> | Plus |
| 2R | 9706755..9706948 | 353..546 | 100 | -> | Plus |
| 2R | 9707021..9707376 | 547..903 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:57 Download gff for
MXO02653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5593786..5594088 | 1..300 | 98 | -> | Plus |
| arm_2R | 5594145..5594196 | 301..352 | 100 | -> | Plus |
| arm_2R | 5594260..5594453 | 353..546 | 100 | -> | Plus |
| arm_2R | 5594526..5594881 | 547..903 | 98 | | Plus |
