MXO02654.5prime Sequence
540 bp (540 high quality bases) assembled on 2007-04-10
> MXO02654.5prime
CAGTCGACATGGTAGCCGGGATGCAGCGCAACTACAGGCACTATTTTAAG
CCGGGCGTGGCTGCCTTCGACCTGCACCATGCCCAGCCGGAAGCCATGGC
CGACGCCGAATTGGATGTCGCCGCTCCAGATGCATCGTGCCAGAGGTTGG
ACGTTTTCGGAAAGGAATCCAATCGGAATCAGGCAGTTTCAAGAAGATCC
CAAGGCAGGCCCACGAAGAGAACCAAAAACGGCACTGGAAATGGGGTCAG
CAAGCAACCTCGTCGTTTGATAAAGTCCCCGGAGGGGCACAAGAAGAAGG
AAGTTGGCAAGAAGAGTAACACAGCGGAGCCCATTATTTACCTGTTCGCC
CTTGTGTTTGTCTATCTGCTTCTGAAGGCCGCCTCGGACATCAACCAGCA
CTACAAGTCGCAGAACAAAGGGGACAAGCGACTGCGCCGGTGCTCGCTGC
AATCTTATGCCCAGATCCACAAGCAGGATCGCCGGTCATCAAAAGGTATT
TCACCAAAATCTTTGCCAAAGTTTGCAAGCTTTCTAGACC
MXO02654.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:13:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8248-PA | 519 | CG8248-RA | 1..516 | 9..524 | 2580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8248-RA | 1372 | CG8248-RA | 443..959 | 8..524 | 2585 | 100 | Plus |
| CG8248-RB | 1369 | CG8248-RB | 443..956 | 8..524 | 2530 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8919524..8919926 | 410..8 | 2015 | 100 | Minus |
| 2R | 25286936 | 2R | 8919353..8919467 | 524..410 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:21:37 has no hits.
MXO02654.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:31 Download gff for
MXO02654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8248-PA | 1..519 | 9..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:15 Download gff for
MXO02654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8248-RA | 438..968 | 1..535 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:12 Download gff for
MXO02654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8248-RA | 438..968 | 1..535 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:12 Download gff for
MXO02654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8919344..8919466 | 411..535 | 96 | <- | Minus |
| 2R | 8919524..8919930 | 1..410 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:15 Download gff for
MXO02654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4806849..4806971 | 411..535 | 96 | <- | Minus |
| arm_2R | 4807029..4807435 | 1..410 | 99 | | Minus |
