MXO02656.5prime Sequence
613 bp (596 high quality bases) assembled on 2007-04-10
> MXO02656.5prime
CAGTCGACATGCAGAGTGTTCTCAACACCGTCAAGGGCACAGCGCTCAAT
GTGGCCGAATATCTGACGCCCGTTTTGAAGGAATCGAAATTCCGTGAGAC
AGGTGTTCTCACTCCGGAAGAATTCGTGGCCGCCGGTGATCACCTGGTGC
ACCATTGTCCAACTTGGCAGTGGGCCGCTGGCGATGAGACCAAGACAAAA
CCCTACCTACCAAAGGATAAGCAATTCCTGATAACGCGCAATGTTCCCTG
CTATCGTCGCTGCAAGCAGATGGAATACGTCGGCGAGGAGACGCTGGTGG
AGGAGGAGTCCGGTGACGGCGGTTGGGTGGAGACTCATCAACTGAACGAT
GATGGCACCACCCAGCTGGAGGACAAGATCTGCGAACTGACAATGGAGGA
GACAAAGGAAGAAATGCACACTCCAGATAGCGACAAATCTGCGCCGGGCG
CTGGGGGCCAGGCTGAAGACGAGGACGACGACGAGGCTATTGACATGGAC
GATTTCGAGGAGAGCGGCATGCTGGAGCTGGTCGATCCGGCTGTAGCCAC
CACGACACGCAAGCCGGAGCCGGAAGCAAAGGCCAGCCCAGTGGCAGCCG
CATCGGGCGACGC
MXO02656.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:13:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6877-PA | 993 | Aut1-RA | 1..605 | 9..613 | 3025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg3-RA | 1221 | CG6877-RA | 128..736 | 5..613 | 3030 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18749791..18749998 | 406..613 | 1040 | 100 | Plus |
| 3L | 28110227 | 3L | 18749547..18749739 | 216..408 | 965 | 100 | Plus |
| 3L | 28110227 | 3L | 18749336..18749479 | 73..216 | 705 | 99.3 | Plus |
| 3L | 28110227 | 3L | 18748814..18748890 | 5..81 | 370 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:27:36 has no hits.
MXO02656.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:31 Download gff for
MXO02656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6877-PA | 1..605 | 9..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:10 Download gff for
MXO02656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aut1-RA | 125..736 | 1..613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:36 Download gff for
MXO02656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg3-RA | 125..736 | 1..613 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:36 Download gff for
MXO02656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18748811..18748889 | 1..80 | 96 | -> | Plus |
| 3L | 18749344..18749479 | 81..216 | 100 | -> | Plus |
| 3L | 18749548..18749738 | 217..407 | 100 | -> | Plus |
| 3L | 18749793..18749998 | 408..613 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:10 Download gff for
MXO02656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18741911..18741989 | 1..80 | 96 | -> | Plus |
| arm_3L | 18742444..18742579 | 81..216 | 100 | -> | Plus |
| arm_3L | 18742648..18742838 | 217..407 | 100 | -> | Plus |
| arm_3L | 18742893..18743098 | 408..613 | 100 | | Plus |
