MXO02660.5prime Sequence
791 bp (496 high quality bases) assembled on 2007-04-10
> MXO02660.5prime
CAATCGACATGGCGGCCTTAATCAGGAATCTGGGTGCCCGTGCCGCAGTC
GCCGCTCTGTCGGCCAAACATGTGGTGCCCGCTGCTGGATCCACTGCTCT
TCGGATGGCCAGTACAACGCCAGTGGAGCCTAAGAAGGCGGATAAGCCCA
CTGTCCGCCAGCCGGACGCAGTCGCTCGCTCGCATCTCTCCGATTTCGGG
CGCTATGTGGCCGAGTGCCTGCCCAAGTACATGCAAAAGGTGCAGCTGAC
CGCCGGCGATGAGCTGGAGGTGCTTATTGCACCAGAGGGCGTGGTGCCCG
TGCTGCAGTTCCTTAAGGATCATCATCAGGCGCAGTTTACCAACCTGGTT
GACATTGCCGGCGTGGATGTGCCCTGTCGCAAGAACCGATTCGAGGTGGT
CTACAATTTGCTCTCGCTGCGCTACAATTCGCGCATCCGCGTTAAGACCT
ACACCGATGAGCTGACTCCTCTGGACTCCGCCTGCGAGGTGCATAAGGCG
GCCAACTGGTACGAACGTGAGATCTGGGACATGTACGGCGTGTTCTTTGC
CAACCATCCCGACTTGCGCCGCATCCTGACCGATTACGGTTTTGAGGGAC
ATCCCCAGCGCCGCGACTTCCCGCTGTCCGGCTACGAAGAGCTGCGCTAC
GATGATGAGAAGAAGCGAGTCATCTGCGAGCCCTTGGAGTTGGCCCAGGA
GTTCAGGAAGTTTGACTTGTCGGCGCCTTGGGAACAGTTCCCCAACTTCC
GCAACGCTAATCACCCCGCCGAGGTAGTTCCGCCACAGGCT
MXO02660.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12079-PA | 798 | CG12079-RA | 1..783 | 9..791 | 3765 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NDUFS3-RA | 976 | CG12079-RA | 107..889 | 9..791 | 3825 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3158572..3159215 | 791..148 | 3130 | 99.1 | Minus |
| 3L | 28110227 | 3L | 3159274..3159349 | 147..72 | 380 | 100 | Minus |
| 3L | 28110227 | 3L | 3159409..3159472 | 72..9 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:28:25 has no hits.
MXO02660.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:33 Download gff for
MXO02660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12079-PA | 1..783 | 9..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:11 Download gff for
MXO02660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12079-RA | 105..889 | 6..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:06 Download gff for
MXO02660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NDUFS3-RA | 105..889 | 6..791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:06 Download gff for
MXO02660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3158572..3159215 | 148..791 | 99 | <- | Minus |
| 3L | 3159274..3159348 | 73..147 | 100 | <- | Minus |
| 3L | 3159409..3159474 | 6..72 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:11 Download gff for
MXO02660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3158572..3159215 | 148..791 | 99 | <- | Minus |
| arm_3L | 3159274..3159348 | 73..147 | 100 | <- | Minus |
| arm_3L | 3159409..3159474 | 6..72 | 98 | | Minus |
