MXO02662.5prime Sequence
693 bp (571 high quality bases) assembled on 2007-04-10
> MXO02662.5prime
CACTCGACATGGCACGAATCGTGTACGACGGCAAGTTCCATTGCGGAGGA
TCCTTACTGACGAAGGATTACGTTCTATCGGCCGCTCACTGCGTGAAGAA
ACTGCAAAAATCCAAAATCAGAGTCATATTCGGCGACCACGATCAAAAGA
TCACCTCGGAGTCACAGGCCATCCAACGTGCGGTTACGGCTGTGATAAAG
CACAAGAGCTTTGACCCCGATACATACAACAACGACATTGCCCTGTTGCG
ACTTCGCAAGCCTATATCGTTTTCTAAAATTATAAAGCCAATCTGCCTAC
CGCGCTATAATTACGACCCCGCAGGTCGCATTGGAACGGTTGTCGGCTGG
GGACGGACATCCGAGGGAGGAGAACTACCATCCATAGTTAATCAAGTTAA
GGTGCCAATCATGTCCATCACGGAATGCCGAAATCAAAGATACAAAAGTA
CTCGAATTACCTCATCCATGTTGTGTGCGGGTAGGCCTTCCATGGACTCA
TGCCAGGGCGACAGTGGAGGACCGCTGTTGCTATCCAATGGCGTTAAGTA
TTTCATCGTCGGCATTGTGTCCTGAGGCGTTGGTTGCGGCCGCGAAGGAT
ATCCGGGTGTTTACTCCAGAGTGAGCAAATTCATACCGTGGATTAAGTCT
AATTTAGAAAATACCTGCCTGTGTTCAGCAAGCTTTCTAGACC
MXO02662.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11836-PB | 672 | CG11836-RB | 1..669 | 9..677 | 3270 | 99.5 | Plus |
| CG11836-PA | 672 | CG11836-RA | 1..669 | 9..677 | 3270 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11836-RF | 1102 | CG11836-RF | 317..985 | 9..677 | 3300 | 99.6 | Plus |
| CG11836-RE | 1076 | CG11836-RE | 291..959 | 9..677 | 3300 | 99.6 | Plus |
| CG11836-RI | 1101 | CG11836-RI | 316..984 | 9..677 | 3300 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25071810..25072127 | 9..326 | 1560 | 99.4 | Plus |
| 3R | 32079331 | 3R | 25072318..25072595 | 400..677 | 1375 | 99.6 | Plus |
| 3R | 32079331 | 3R | 25072185..25072266 | 323..404 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:33:55 has no hits.
MXO02662.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:33 Download gff for
MXO02662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11836-PA | 1..672 | 9..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:00 Download gff for
MXO02662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11836-RI | 310..984 | 1..677 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:38 Download gff for
MXO02662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11836-RI | 310..984 | 1..677 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:38 Download gff for
MXO02662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25071804..25072125 | 1..324 | 98 | -> | Plus |
| 3R | 25072187..25072263 | 325..401 | 100 | -> | Plus |
| 3R | 25072320..25072597 | 402..676 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:00 Download gff for
MXO02662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20897526..20897847 | 1..324 | 98 | -> | Plus |
| arm_3R | 20897909..20897985 | 325..401 | 100 | -> | Plus |
| arm_3R | 20898042..20898319 | 402..676 | 98 | -> | Plus |
