MXO02663.5prime Sequence
870 bp (760 high quality bases) assembled on 2007-04-10
> MXO02663.5prime
CAGTCGACATGAGCAGCATGGATGTGAAGGAATTGGAAGTAAACAAAACC
CTGCCCTATGATCCCTCCCTGCTTAAGGTAAACATCTCGCTGCGGCAGGT
CGAGGAGATCGCTTTGACGGTGTCCCAGCGATGCCATGTCACCGGAGCCA
ACGAAATCGCCTGGGCGCTGAGGGCTCTGATGCTGACAGATCTTACCACC
TTGGCGGGCGATGATACGGCTGCCAATGTGCGGAGACTATGCCTACGCGC
CTGCTATCCCTTCGAGCCGCAGTTCTTTGACAAGTTCTTCGACCGGGCTC
TCATCCCAGAGATGCACACGGCCGCCGTTTGCGTTTATCCCGCCAGGGTA
AAGGACGCCTATTTAGCTATCCTACAGTACGACAAACTGGATAAGGTGGC
TATTGCAGCGGTGGCCACGGGATTTCCCACGGGCCAGTACGGCCTGCAGA
CCCGCCTGCAGGAGATCAGCCACGCCATTCTTGCTGGAGCCACAGAGATC
GACATTGTGATCAATCGCCAGTTGGCCCTCGTTGGCGACTGGGAGGCCAT
GTACAACGAGGTGGTCCTTATGCGCAGTGCCTGTGGACAAAGGGCTCACC
TAAAAACAATTCTGGCCATCGGGGAGCTGGGCACCATGGATAATGTTTAC
AAAGCAGCCATGGTTTGCATGATGGCCGGAGCGGATTTTATCAAGACCTC
AACGGGAAAGGAGACAGTCAACGCCACCCTGCCCGTTGGCCTGGTCATGA
TATTTGCCATTCAAGAATTCAAACGACGCACGTGCCAGATTGTGGGCCTT
AAGCCAGCCGGAGGAGTAAAGACTGTACGAGATGCGATCGCCTGGATGAC
GTTGGTCAACGAAACTCTTG
MXO02663.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8525-PA | 1044 | CG8525-RA | 1..862 | 9..870 | 4260 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8525-RD | 1269 | CG8525-RD | 120..981 | 9..870 | 4280 | 99.8 | Plus |
| CG8525-RA | 1378 | CG8525-RA | 229..1090 | 9..870 | 4280 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12425815..12426401 | 60..646 | 2920 | 99.8 | Plus |
| 2R | 25286936 | 2R | 12426462..12426687 | 645..870 | 1115 | 99.6 | Plus |
| 2R | 25286936 | 2R | 12425711..12425762 | 9..60 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:49:04 has no hits.
MXO02663.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:35 Download gff for
MXO02663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8525-PA | 1..862 | 9..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:18 Download gff for
MXO02663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8525-RA | 224..1090 | 1..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:01 Download gff for
MXO02663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8525-RA | 224..1090 | 1..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:01 Download gff for
MXO02663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12425706..12425762 | 1..60 | 95 | -> | Plus |
| 2R | 12425816..12426399 | 61..644 | 99 | -> | Plus |
| 2R | 12426462..12426687 | 645..870 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:18 Download gff for
MXO02663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8313211..8313267 | 1..60 | 95 | -> | Plus |
| arm_2R | 8313321..8313904 | 61..644 | 99 | -> | Plus |
| arm_2R | 8313967..8314192 | 645..870 | 99 | | Plus |
