MXO02665.5prime Sequence
801 bp (747 high quality bases) assembled on 2007-04-10
> MXO02665.5prime
CAGTCGACATGTTGGCCTCCGCCTGGCGCAGCGTGGCCACCTCCGTGGAG
ACCCAGTTGACGGCCACCTACTTCCGAGTGCAAAAACTACGAAAAGTCGG
CTTCAGAGGCATGCACAGCACATTGGAGGACGTGCAGCTGGAGGGCATGG
AGATCAAGATCCTGCCGGCCCTGCAGGATAACTATATGTATCTGATTGTA
GACACGAAGACGCGCGAGGCGGCCGTGGTGGATCCCGTGGAGCCGGAGCT
GGTCATTAAGACGGTGCAGGAGCAGCAGCTGACCCTCAGCAAGGTGCTGA
CCACGCACCATCACTGGGACCACGCCGGTGGCAATGAAAAGCTGCTCAAG
CTGTGGGAGAAGGAGCTGGATTTTGTACCCCCCCCCTGACCGCATCGGGG
CATTGAACAAAAAGGTTCAGCAGGACGACACCTTCACCATTGGTGGTCTG
CATGTCAAGTGCTTGTCCACGCCGTGCCACACTACCGGCCACATCTGCTA
CCACATCACCGCGCAGCAGGGCAGCGGCGAGGGAGCCGTCTTCACCGGCG
ACACCCTCTTCCAGGGCGGATGCGGCCGCTTCTTCGAGGGCACTCCCGAG
GAAATGTACGAGGCGCTGTGCACAAAGCTCTCCGCCTTGCCGGACGCCAC
AAAGGTGTTCTGTGGCCACGAGTACACGCTGCAGAACATGAGCTTCGCCC
GTCACGTCGAGCCCGACAACGAGGTCATCCAGCAGAGGATCGAGTGGGCC
ATGCACCGGCGCGCCTCCCAGGATCCCACTGTGCCCTCTACCATTGGCGA
G
MXO02665.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4365-PC | 1047 | CG4365-RC | 507..921 | 387..801 | 2025 | 99.5 | Plus |
| CG4365-PA | 918 | CG4365-RA | 378..792 | 387..801 | 2025 | 99.5 | Plus |
| CG4365-PB | 816 | CG4365-RB | 276..690 | 387..801 | 2025 | 99.5 | Plus |
| CG4365-PA | 918 | CG4365-RA | 1..362 | 9..370 | 1810 | 100 | Plus |
| CG4365-PC | 1047 | CG4365-RC | 200..491 | 79..370 | 1460 | 100 | Plus |
| CG4365-PB | 816 | CG4365-RB | 1..260 | 111..370 | 1300 | 100 | Plus |
| CG4365-PC | 1047 | CG4365-RC | 1..70 | 9..78 | 350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4365-RA | 1092 | CG4365-RA | 84..875 | 9..801 | 3775 | 98.5 | Plus |
| CG4365-RC | 1231 | CG4365-RC | 308..1029 | 79..801 | 3425 | 98.3 | Plus |
| CG4365-RB | 1013 | CG4365-RB | 75..796 | 79..801 | 3425 | 98.3 | Plus |
| CG4365-RC | 1231 | CG4365-RC | 109..178 | 9..78 | 350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20799141..20799864 | 77..801 | 3410 | 98.3 | Plus |
| 3L | 28110227 | 3L | 20798790..20798859 | 9..78 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:49:15 has no hits.
MXO02665.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:36 Download gff for
MXO02665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4365-PC | 1..70 | 9..78 | 100 | -> | Plus |
| CG4365-PC | 199..921 | 79..801 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:24 Download gff for
MXO02665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4365-RA | 75..875 | 1..801 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:06 Download gff for
MXO02665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4365-RA | 75..875 | 1..801 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:06 Download gff for
MXO02665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20798781..20798859 | 1..78 | 95 | -> | Plus |
| 3L | 20799143..20799864 | 79..801 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:24 Download gff for
MXO02665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20791881..20791959 | 1..78 | 95 | -> | Plus |
| arm_3L | 20792243..20792964 | 79..801 | 98 | | Plus |
