MXO02668.5prime Sequence
885 bp (635 high quality bases) assembled on 2007-04-10
> MXO02668.5prime
CAGTCGACATGGCACAAGTCGCTTTTCTGGACAACCTGCTTAGGGAGTAC
CTAGTTTTTCGAGGTTTCTCCAGCACCTTGAAGGCCCTCGACTTGGAGCA
GCGCACTGAGAAGGACCAGCACTTCCGTGCGGAACGAATTCTGGAGCAAT
TCAATAATGCTGTGCAAGCGTCTGACCTTCAGGCTCTCAGGAGTTTGTGG
TTTCACCTGGACAACAACATATTTTCCAAGCTGGAGCATACGTATGCCGT
TGCTGTCAAGAAACTGGAAAACAGCCTCCTAAAATACTACCTGGTGACCG
CCTACAGCAGCAATCGACCTGAGAAGGTGTCCGAGTTCTTTAACAAGTTG
GCGGGCGATCTGCAGCAGCTAAGCGAGTGGAAGGATTGGTTCTACTTTCC
GTTTTGCAAGAATGCCGAGGAGTCGCCCACTTTTGCCCTGTTCTTCACCA
AGCAATGGCAGGATACGTTGCTTCTGTCGCTGCGCAACTTCCTGACCACC
GTATACCAGTGCCTGCCGCAGCCCACATTCGTGCGGGCGGAGCAGGAAGC
GGCCCACATGCAGCGTCTCAGCGAAGACAACGCTGGGCTACGCACTCGGG
TACTCAACTTGCAGCAGGAGCTGAACCAGATGACCCAGCAACAATCAGGA
ACTGCGGCCGCAAGCGGAAGTTCACTTGGCGGTGGGGTCGACAATGGAGC
CCGCAGACGCAGCGTGTATCGCCAGCAGCAGAGCCTGAGCGACATTCTGC
CTTTCGACATCAGTCCTCCCGGACACATAGTCGATGATTTCTGCATCATT
GCTTCCGAGGCGAACAGCGTGAGCCAGGCCAGCGACGCACAGGCGCGCAG
CCTTAAGCAGTTAATCCGTAATATTGGATCGGGCA
MXO02668.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6005-PA | 975 | CG6005-RA | 1..877 | 9..885 | 4360 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6005-RB | 1456 | CG6005-RB | 87..963 | 9..885 | 4370 | 99.9 | Plus |
| CG6005-RA | 1313 | CG6005-RA | 87..963 | 9..885 | 4370 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19022951..19023442 | 885..394 | 2460 | 100 | Minus |
| 3R | 32079331 | 3R | 19023701..19023944 | 252..9 | 1220 | 100 | Minus |
| 3R | 32079331 | 3R | 19023504..19023645 | 393..252 | 695 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:27:47 has no hits.
MXO02668.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:37 Download gff for
MXO02668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6005-PA | 1..876 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:12 Download gff for
MXO02668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6005-RA | 73..954 | 1..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:39 Download gff for
MXO02668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6005-RA | 81..962 | 1..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:39 Download gff for
MXO02668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19022952..19023442 | 394..884 | 100 | <- | Minus |
| 3R | 19023504..19023644 | 253..393 | 99 | <- | Minus |
| 3R | 19023701..19023950 | 1..252 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:12 Download gff for
MXO02668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14849423..14849672 | 1..252 | 98 | | Minus |
| arm_3R | 14848674..14849164 | 394..884 | 100 | <- | Minus |
| arm_3R | 14849226..14849366 | 253..393 | 99 | <- | Minus |
