MXO02672.5prime Sequence
756 bp (665 high quality bases) assembled on 2007-04-10
> MXO02672.5prime
CAGTCGACATGTCCTCTCCCAGTGAATCCTCTTCAGCTTCTGAGCACGAG
GCTAGCGATGACAACGAAACTCAGAATGCCATTCGCGAAGATCTCAAAGG
AATGTCATTCGAGGAGATAATGAAACTAAAAGAGGAGCTGGGCGCCAAGG
TGTACAAAGAGGCTGTGCTCGGTAGCAAGAGTTCTAGACCCCAAAAACCA
AAGGCCAAAACCGACCTCAAGCGGCTAAACAAAAACCGACCTCGTGAAAT
GACCACCAGACGACAGGTTCCATTTTTGGGCGCCGAGCACAGAGTGGAGC
GGAAAAAAAATGTTGAACTCAGAGATCCAAGATTTGACGAAAAATCCGGA
ACATATAGTGCAGAAACCTTCTTGATGAACTACCCGTTTGTCTCCCAGAT
TCGAGCAAAGGAAGTTGGTCAGCTGAAGAAAAAACTGGACGAAGTGGAGG
ATGAGGCGGAGAAGCACCATATAAAGGACACCATGCAGCGACTTATCAAT
AAAAATGTGGAGGACAAGAAGTGGCACACCAAACAGAAGCAACTGAAAAA
GGAGCGCTCCGCCATTCAGAAGAAACACGATTTGGGACAACAACCTCATT
ATCTGACAAAGAAGGAGCGTCGAGCTAAGGAACTAGTTGCCCAATTCGAG
AAGCTGACAAACACTGGATAACTCAACAAGCACATGGAAAAGCGACGCAA
GAAGAACGCCGCCAAGGACCGCAAACGCATTGGTATAGAAGCAAGCTTTC
TAGACC
MXO02672.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8461-PA | 735 | CG8461-RA | 1..732 | 9..740 | 3510 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8461-RA | 883 | CG8461-RA | 91..822 | 9..740 | 3570 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14512883..14513422 | 612..73 | 2640 | 99.3 | Minus |
| 3R | 32079331 | 3R | 14512700..14512827 | 740..613 | 610 | 98.4 | Minus |
| 3R | 32079331 | 3R | 14513482..14513547 | 74..9 | 330 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:24:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 3194..3247 | 106..159 | 108 | 66.7 | Plus |
MXO02672.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:39 Download gff for
MXO02672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8461-PA | 1..735 | 9..744 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:59 Download gff for
MXO02672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8461-RA | 91..830 | 9..748 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:20 Download gff for
MXO02672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8461-RA | 91..830 | 9..748 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:20 Download gff for
MXO02672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14512692..14512827 | 613..748 | 96 | <- | Minus |
| 3R | 14512883..14513420 | 75..612 | 99 | <- | Minus |
| 3R | 14513482..14513547 | 9..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:59 Download gff for
MXO02672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10338414..10338549 | 613..748 | 96 | <- | Minus |
| arm_3R | 10338605..10339142 | 75..612 | 99 | <- | Minus |
| arm_3R | 10339204..10339269 | 9..74 | 100 | | Minus |
