MXO02676.5prime Sequence
549 bp (549 high quality bases) assembled on 2007-04-10
> MXO02676.5prime
CAGTCGACATGACCACGTTGCGACCCTTCACCTGCGACGACCTCTTTAAG
TTCAACAATGTAAACTTTGACCCACTTACGGAGACCTACGGGCTGTCCTT
CTACACCCAGTACCTGGCCAAGTGGCCGGAGTACTTTCAGCTTGCGGAGT
CGCCCAGCGGACAAATAATGGGCTACATCATGGGCAAGGTGGAGGGACAC
CTGGACAACTGGCACGGACACGTGACTGCGCTGACCGTCTCGCCCGACTA
CCGGCGCCTTGGTCTGGCTGCGCTGCTCATGAGTTTCCTGGAGGACATTT
CGGAGAAAAAGCGAGCATACTTTGTGGATCTTTTTGTGAGGAAGAGCAAC
CAGGTGGCAATAAACATGTACACTAACCTTGGCTACATCATATACCGCAC
CATACTTGAGTACTACTCCGGCGACCAGGACGAGGATGCGTACGACATGA
GAAAGGCCTTATCCAGGGACGTCAACAAAAAGTCGGTCATACCGTACACG
CAGCCTGTACGACTGGAACATATAGATATGAATGCAAGCTTTCTAGACC
MXO02676.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:16:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14222-PA | 528 | CG14222-RA | 1..525 | 9..533 | 2600 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NAA20-RD | 1247 | CG14222-RD | 110..634 | 9..533 | 2610 | 99.8 | Plus |
| NAA20-RC | 1242 | CG14222-RC | 110..634 | 9..533 | 2610 | 99.8 | Plus |
| NAA20-RA | 1233 | CG14222-RA | 110..634 | 9..533 | 2610 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19622335..19622471 | 444..308 | 670 | 99.3 | Minus |
| X | 23542271 | X | 19622537..19622666 | 307..178 | 650 | 100 | Minus |
| X | 23542271 | X | 19622729..19622844 | 177..62 | 580 | 100 | Minus |
| X | 23542271 | X | 19622176..19622265 | 533..444 | 450 | 100 | Minus |
| X | 23542271 | X | 19622913..19622965 | 61..9 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:28:39 has no hits.
MXO02676.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:41 Download gff for
MXO02676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14222-PA | 1..528 | 9..536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:20 Download gff for
MXO02676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NAA20-RA | 110..634 | 9..533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:13 Download gff for
MXO02676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NAA20-RA | 110..634 | 9..533 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:13 Download gff for
MXO02676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19622176..19622264 | 445..533 | 100 | <- | Minus |
| X | 19622335..19622471 | 308..444 | 99 | <- | Minus |
| X | 19622537..19622666 | 178..307 | 100 | <- | Minus |
| X | 19622729..19622844 | 62..177 | 100 | <- | Minus |
| X | 19622913..19622965 | 9..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:20 Download gff for
MXO02676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19516209..19516297 | 445..533 | 100 | <- | Minus |
| arm_X | 19516368..19516504 | 308..444 | 99 | <- | Minus |
| arm_X | 19516570..19516699 | 178..307 | 100 | <- | Minus |
| arm_X | 19516762..19516877 | 62..177 | 100 | <- | Minus |
| arm_X | 19516946..19516998 | 9..61 | 100 | | Minus |
