MXO02686.5prime Sequence
874 bp (687 high quality bases) assembled on 2007-04-10
> MXO02686.5prime
CAGTCGACATGGTCGTGGATATGGACACCAGCGAGACAGCCGTGGAGCTC
ACTGAGGCGGAGAACGAGCTGTACGACAGACAAATCCGACTCTGGGGTCT
GGAATCTCAAAAACGCCTTCGCACGGCCAAGATTCTCATCGCTGGACTGT
GCGGCCTGGGCGCCGAGATAACCAAGAACATCATCCTGTCCGGAGTGAAC
TCCGTGAAGCTGCTGGATGACAAGGACGTAACCGAGGAGGACTTTTGTTC
ACAATTCCTTGTCCCCCGTGAATCGCTGAACACCAACCGGGCCGAAGCAT
CATTGACACGGGCACGTGCTCTCAATCCCATGGTGGACATCTCCGCCGAC
CGCGAGCCCTTGAAGGAGAAGACCTCTGAGTTCTTCGGTCAGTTCGACGT
TGTGGTGGTCAATGGCGCGACCAACGAGGAACTGTTGCGCATTGACACCA
TTTGCCGGGACCTGGGCGTCAAGTTCATAGCCACCGATGTGTGGGGCACC
TTCGGGTTCTACTTTGCCAGTCTGCAGAAGCACAGCTACGTCGAGGATGT
TATTAAGCACAAGGTCGTAGCCAATTCGGAGAAGAAAAAGAAGTATGAAA
CCGTGTCCATTCCAACGCAGCGTGATGTGGATTATCCCGGCTACTCTGCC
TGGCTTGATTTCGATGTTACCGAGCCTAGTTATTTGCGAAAATTGAAGCG
CAATGGCCCGGGTGTTTTGCTATTAAGTGTCCTGCAAAAGTTCCGCACAC
CCCACAAGCGGGATCCCAGCTACAAGACCCGAGAAGCTGACCTGGAATTG
CTTCGCGGACTTCGCGACGAACTGCTGCCAAACTCTATACTGGGCGACGA
ACCTCTAGGTCTGATTTTTGCACA
MXO02686.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12276-PA | 1014 | Aos1-RA | 1..866 | 9..874 | 4205 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aos1-RA | 1167 | CG12276-RA | 92..957 | 9..874 | 4255 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12433128..12433558 | 545..115 | 2155 | 100 | Minus |
| 3R | 32079331 | 3R | 12432743..12433072 | 874..545 | 1590 | 98.8 | Minus |
| 3R | 32079331 | 3R | 12433625..12433731 | 115..9 | 520 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:46:37 has no hits.
MXO02686.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:45 Download gff for
MXO02686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12276-PA | 1..865 | 9..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:12 Download gff for
MXO02686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aos1-RA | 92..956 | 9..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:39:52 Download gff for
MXO02686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aos1-RA | 92..956 | 9..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:39:52 Download gff for
MXO02686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12432744..12433072 | 545..873 | 98 | <- | Minus |
| 3R | 12433129..12433557 | 116..544 | 100 | <- | Minus |
| 3R | 12433625..12433731 | 9..115 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:12 Download gff for
MXO02686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8259347..8259453 | 9..115 | 99 | | Minus |
| arm_3R | 8258466..8258794 | 545..873 | 98 | <- | Minus |
| arm_3R | 8258851..8259279 | 116..544 | 100 | <- | Minus |
