MXO02688.5prime Sequence
858 bp (606 high quality bases) assembled on 2007-04-10
> MXO02688.5prime
CAGTCGACATGGAGGAGGTCGAAATCAGCACAGAAAAGAAATCCAATCCC
GTAAAGTCATTTATTGCGGGCGGCGTGGGAGGCATGTGCAATGTGCTCGT
TGGCCATCCATTGGACACAATAAAGGTCCGTCTCCAAACCATGCCCACAC
CTCCACCTGGACAGCCGCCGAGATACAAGGGAGTCATAGATTGTGCCGCC
AGGACATTTCGTTATGAGGGTTTTCGCGGATTCTACAGAGGAATATCCGC
TCCACTTGTGGGAGTAACACCCATCTATGCCGTGGACTTTGCCGTCTATG
CGGCGGGTAAACGATTGTTCCAAACGGATGACCACATTAGGCTCACCTAC
CCACAAATCTTCGCCGCGGGATCCTTGGCCGGAGTTTGTTCTGCCCTCGT
CACAGTGCCCACCGATCGTATAAAAGTCCTTCTGCAGACGCAAACCGTGT
CCAACGGACCTCTGCTCTACAATGGAACCATTGACACGGCCGCCAAGCTA
TATAGGCAGGGTGGCATTCGGAGCCTCTTCAAGGGAACATGCGCGTGCAT
TCTGAGAGACTCGCCCACCGGTTTTTACTTTGTGACCTACGAATTCCTAC
AGGAATTGGCTAGAAAGAAGTCCGCCAATGGAAAGATTAGCACCACATCA
ACTATTCTGTCCGGCGGAACGGCGGGCATTGTGTTTTGGACTTTGGCCGT
GCCGTTCGATGTACTTAAAAGCCGTCTCCAGTCGGCACCTGAGGGAACAT
ACAAGCACGGCATTCGCAGCGTTTTTAGAAACCTCATGGCCACAGAAGGC
CCAAAAGCTCTATTTCGCGGTATCTTGCCCATTCTACTTCGTGCCTTTCC
CTCCACCG
MXO02688.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3476-PA | 900 | CG3476-RA | 1..850 | 9..858 | 4175 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3476-RA | 1245 | CG3476-RA | 286..1135 | 9..858 | 4205 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7027986..7028420 | 124..558 | 2160 | 99.8 | Plus |
| 2L | 23513712 | 2L | 7028488..7028666 | 557..735 | 895 | 100 | Plus |
| 2L | 23513712 | 2L | 7027811..7027929 | 9..127 | 595 | 100 | Plus |
| 2L | 23513712 | 2L | 7028726..7028849 | 735..858 | 590 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:28:02 has no hits.
MXO02688.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:46 Download gff for
MXO02688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3476-PA | 1..850 | 9..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:16 Download gff for
MXO02688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3476-RA | 281..1135 | 1..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:45 Download gff for
MXO02688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3476-RA | 281..1135 | 1..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:45 Download gff for
MXO02688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7028727..7028849 | 736..858 | 98 | | Plus |
| 2L | 7027806..7027927 | 1..125 | 97 | -> | Plus |
| 2L | 7027988..7028420 | 126..558 | 99 | -> | Plus |
| 2L | 7028490..7028666 | 559..735 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:16 Download gff for
MXO02688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7027806..7027927 | 1..125 | 97 | -> | Plus |
| arm_2L | 7027988..7028420 | 126..558 | 99 | -> | Plus |
| arm_2L | 7028490..7028666 | 559..735 | 100 | -> | Plus |
| arm_2L | 7028727..7028849 | 736..858 | 98 | | Plus |
