MXO02689.5prime Sequence
880 bp (815 high quality bases) assembled on 2007-04-10
> MXO02689.5prime
CAGTCGACATGATGAGCTTTCCACGCATGTTATCACTGTGCCTTAGCGTG
CTTGTAATACTGCCGCTTCCCCTCCAGTCGGTGGATCCCCTGACCATTGG
TGCCGTTGGCGCCGTGGCCCTTGGGGCGTACTTCAAAGAACATACATATT
GCCGGTTTGCCGAATGCTGCGATGACCGAAACATTCCGGCGAGAATAGAT
GAATTAGAAAGATCCCTGGAACGCACCCTCATTGGCCAGCACATCGTGAG
GCAGCATATCGTCCCCGCACTGAAGGCGCACATCGCTTCGGGCAATAAGT
CACGGAAACCGCTGGTCATCAGCTTTCACGGCCAGCCCGGTACGGGCAAG
AATTTTGTGGCTGAGCAAATTGCAGATGCTATGTATTTGAAGGGCTCCAG
GTCGAACTATGTAACCAAGTATCTCGGACAAGCTGACTTTCCCAAGGAAA
GTGAGGTGTCTAACTATAGGGTGAAAATCAATAATGCGGTGCGCGATACC
TTGCGTAGCTGCCCGAGATCTTTGTTCATCTTCGACGAGGTGGATAAAAT
GCCCAGCGGAGTATTCGACCAGCTCACCTCGCTGGTGGACTACAACGCCT
TTGTCGATGGCACGGATAACACAAAGGCAATCTTCATCTTTCTCTCGAAC
ACGGCGGGCAGTCATATAGCCAGTCATCTGGGTAGTGTGATGAAGAATGG
TAGGCTGCGCGAGGACACACGACTGAGTGACTTTGAGCCCCTTTTGCGGA
AGGCCGCCTATAACATGGATGGCGGTATGAAAAGACCACCATGATTGAGT
CTCATGTTATCGATCATTTCATTCCGTTCCTGCCGATGGAGAAGGCGCAT
GTGATCAAGTGCCTGAAGGCGGAGCTTTTA
MXO02689.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:17:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3024-PA | 1023 | torp4a-RA | 1..873 | 9..880 | 4300 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Torsin-RB | 1383 | CG3024-RB | 268..1140 | 9..880 | 4325 | 99.8 | Plus |
| Torsin-RA | 1184 | CG3024-RA | 69..941 | 9..880 | 4325 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4648835..4649515 | 880..201 | 3340 | 99.7 | Minus |
| X | 23542271 | X | 4649573..4649765 | 201..9 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:10 has no hits.
MXO02689.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:46 Download gff for
MXO02689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3024-PA | 1..872 | 9..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:18 Download gff for
MXO02689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Torsin-RA | 69..940 | 9..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:47 Download gff for
MXO02689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Torsin-RA | 69..940 | 9..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:47 Download gff for
MXO02689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4648836..4649514 | 202..879 | 99 | <- | Minus |
| X | 4649573..4649765 | 9..201 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:18 Download gff for
MXO02689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4542869..4543547 | 202..879 | 99 | <- | Minus |
| arm_X | 4543606..4543798 | 9..201 | 100 | | Minus |
