MXO02696.5prime Sequence
711 bp (678 high quality bases) assembled on 2007-04-10
> MXO02696.5prime
CAGTCGACATGTCGGCCATATCCGGACGCGCCCTGCACTATGTGTTCAAA
ATCGGAGATCGGGCGAAAAACGCCTTCTTCTTTCGGCAAATCTTGGGAAT
GACGGTGCTGCGGCATGAGGAGTTCAAGGAGGGATGCGACGCAGCTTGCA
ACGGGCCCTATGACAATCGGTGGAGCAAAACAATGGTGGGTTATGGACCC
GAAAGTTCGCATTTCGTCATCGAACTCACGTATAACTATGGAGTGAGCAG
CTACGAAATGGGCAATGATTTTGGGGGCGTGACCATACACTCCAAGGATA
TCCTTTCCCGCGCCGCCGAGCACTCGTATCCTGTGACACAGGTGTCTGGA
AAAGCCGGTAGTCTGCTGATTTCGCCCGACGGCTACAAGTTCTATGTGAT
CGATCAGGCCTCTGCCAGCTCTGATCCTGTCCAATCGGTGGAGCTTAATG
TGAGCAATCTTCAAAACTCGCGCAAATACTGGCACGATTTGCTGCAACTG
AAAGTTCTCGAGGAGAACGAAGCAAGCGTGCGTTTGAGTTACGGTGAACA
GCAGGCTTCACTGGAGATCACCCAGATCTCAGAGCCAATTAATAGAGCTA
AGGCCTATGGACGAATCGCCTTTGCCATTCCGGCGGCCCAGCAGCCACCT
CTCCAAGAAGCGGTTAAAGCAGCTGGCGGGGCCATTCTAACACCTCTGAT
TACCCTGGATA
MXO02696.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1532-PA | 867 | CG1532-RA | 1..703 | 9..711 | 3415 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1532-RB | 1236 | CG1532-RB | 87..789 | 9..711 | 3455 | 99.4 | Plus |
| CG1532-RA | 1073 | CG1532-RA | 87..789 | 9..711 | 3455 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21026572..21027022 | 711..261 | 2210 | 99.3 | Minus |
| X | 23542271 | X | 21027737..21027845 | 262..154 | 545 | 100 | Minus |
| X | 23542271 | X | 21028178..21028275 | 106..9 | 475 | 99 | Minus |
| X | 23542271 | X | 21027902..21027953 | 155..104 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:16:41 has no hits.
MXO02696.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:48 Download gff for
MXO02696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1532-PA | 1..702 | 9..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:44 Download gff for
MXO02696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1532-RA | 87..788 | 9..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:13 Download gff for
MXO02696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1532-RA | 87..788 | 9..710 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:13 Download gff for
MXO02696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21026573..21027021 | 262..710 | 99 | <- | Minus |
| X | 21027738..21027844 | 155..261 | 100 | <- | Minus |
| X | 21027903..21027952 | 105..154 | 100 | <- | Minus |
| X | 21028180..21028275 | 9..104 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:44 Download gff for
MXO02696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20899207..20899302 | 9..104 | 98 | | Minus |
| arm_X | 20897600..20898048 | 262..710 | 99 | <- | Minus |
| arm_X | 20898765..20898871 | 155..261 | 100 | <- | Minus |
| arm_X | 20898930..20898979 | 105..154 | 100 | <- | Minus |
