MXO02705.5prime Sequence
690 bp (690 high quality bases) assembled on 2007-04-13
> MXO02705.5prime
CAGTCGACATGGCAATTATTATGACCTAATCAAGTTACGAAAGGCGCGTA
AAGGCTTTGTACGAAAAACAAATTCACATGGAAGCCCTCGAGGCGAAATT
CATCAAAAAGGTCTTTAAATTCAACAGCAATTTGTTGGATGTCAAGGAAG
CAGCTTCGCGCCATCAGCGGAAAGTGGGAAAGTTGCAAAAAGTGCTCATG
GAGCGGCGGGAGGAGTTGGACAAGCGAGTTTCCTTCATAGAGGAACTTGA
TCGAGAACTGGAGGCCACCAAACTTCACAATTTGGCCATGAAAGATTGGT
TTAAACAGCAGAAAATGCTGGCCAAACAGCGCAAAAACGAAATCATGGAA
AGCATTCACACGCTGTCGAAGACAACAAGAACCTATATAAATCAAGAAGC
GCTGCCGGCACGTGTGAAGGGTGTCACTGTACTCCGTGGCGATAAACGCG
ACCAGTTGATACCCTTTGATCTGAAGGCGACCGATGTGGAAGGACTGGAC
TCACTGTGTCAGCATCTCGAGAGTCTAAATGTGGACGTGGCGCAGTGGCA
GCAGCTTATCTCGCTGGCCATGGACATGGCTATGGAGTCACGTGCTCCCA
CTACTCCGCCCAAGGAAGCAGACAATTGCAAGTCTATAATCGAGATTGAT
CTCACATCGCCGATGAGCCACACCGCAAGCTTTCTAGACC
MXO02705.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7242-PA | 669 | CG7242-RA | 1..666 | 9..674 | 3255 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spc25-RA | 968 | CG7242-RA | 92..757 | 9..674 | 3285 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12962715..12963038 | 351..674 | 1620 | 100 | Plus |
| 3R | 32079331 | 3R | 12962026..12962242 | 136..352 | 1085 | 100 | Plus |
| 3R | 32079331 | 3R | 12961836..12961962 | 9..135 | 590 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:46:43 has no hits.
MXO02705.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:51 Download gff for
MXO02705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7242-PA | 1..669 | 9..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:16 Download gff for
MXO02705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spc25-RA | 92..763 | 9..682 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:39:57 Download gff for
MXO02705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spc25-RA | 92..763 | 9..682 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:39:57 Download gff for
MXO02705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12962717..12963044 | 353..682 | 98 | | Plus |
| 3R | 12961836..12961962 | 9..135 | 97 | -> | Plus |
| 3R | 12962026..12962242 | 136..352 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:16 Download gff for
MXO02705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8787558..8787684 | 9..135 | 97 | -> | Plus |
| arm_3R | 8787748..8787964 | 136..352 | 100 | -> | Plus |
| arm_3R | 8788439..8788766 | 353..682 | 98 | | Plus |
