MXO02708.5prime Sequence
783 bp (783 high quality bases) assembled on 2007-04-13
> MXO02708.5prime
CAGTCGACATGTCGCTTATAAAGAATTTGGTAAAAGAGCCCGAACAGAAG
GCAAAGAAAAAGAAAAAGAATGCGGGATCTGGAGAAAGCGATTCCGATGA
GAAGGACAAGCCTCTGCGGCCGTTCATCAAAACCGCGACAGATCTACAGA
GGCTGAAGCTGGAGAAGCTCATGAAGAATCCGGATAAGCCCGTGGTCATA
CCGGAGCAGCGTCGCGAACGGGACTTCATGTCCTCGGTGCCCACGTTCGT
GCGGAATGTGATGGGAAGCAGTGCTGGAGCGGGTTCCGGCGAGTTCCATG
TGTACCGCCACTTGCGACGCAAGGAGTACGCCCGCCAGAAGAACATCCAG
AACCAGAGTGCCCGCGAAGCAGCTGATGAAGCTTACCAGCAGAAGTTGGA
CGACAACAGACGCGCGGCCGAAGAAAAGACTGCTAAGAAACGAGCCAAAC
GGTTGAAGAGAAAACAGAGGGCGAAAAAGCCGAGAGAGGACAAGAAGCCA
CTGGCTAAGGAAGCCTCAGAGGATAGTAACACAGATTCCGAGGAAGAGCC
CACAGAAGAAAAGGCAGAAAGTAGCCCTGAGGAAGGACAACAGGTGGCAT
CCAAGGAATCCGACGACAATAACACCCAAGAAACTTCGAATGAAGAGGCA
GTGAATTCAAATACAGAAGCGAAAAGCGCAGAGGACACAAATGCAGTGGA
ATTAGATAGCACCGAAGCTACAAAGGAATCCCAAAATGTGGATCAAGAAC
AAGACAAGCCTGTGCCTGCAAGCTTTCTAGACC
MXO02708.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8441-PA | 762 | CG8441-RA | 1..759 | 9..767 | 3770 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:52:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8441-RB | 938 | CG8441-RB | 133..893 | 7..767 | 3790 | 99.9 | Plus |
| CG8441-RA | 841 | CG8441-RA | 36..796 | 7..767 | 3790 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:52:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16185167..16185752 | 767..182 | 2915 | 99.8 | Minus |
| 2R | 25286936 | 2R | 16185811..16185987 | 183..7 | 885 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:52:50 has no hits.
MXO02708.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:52 Download gff for
MXO02708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8441-PA | 1..762 | 9..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:15 Download gff for
MXO02708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8441-RA | 29..796 | 1..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:52 Download gff for
MXO02708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8441-RA | 29..796 | 1..767 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:52 Download gff for
MXO02708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16185167..16185751 | 183..767 | 99 | <- | Minus |
| 2R | 16185812..16185990 | 1..182 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:15 Download gff for
MXO02708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12072672..12073256 | 183..767 | 99 | <- | Minus |
| arm_2R | 12073317..12073495 | 1..182 | 97 | | Minus |
