MXO02711.5prime Sequence
921 bp (725 high quality bases) assembled on 2007-04-13
> MXO02711.5prime
CAGTCGACATGAGCTCTCTTGTTGATACCAGTCACTCGGATATCGATGAC
AATGACTCCTTCCACTCGTTCGACCAAAGCGAAGATATCATGGACAACCT
TAGCCTCTCGCTCTCGGAGAGCGACTGCGACAGCGCCGCGGACTTTGATT
CCGGCTCGGCGGATGAGATTTCCATGGAAAAAAAAATGGTTGGTGCACCC
GCCCAGCTGGGCCAGGGCGCAGGAAATACTTTGAAGCCCACGCCTTCCGA
CGTCTTCGTAAAGCCAAAGTCGCCCGTTTTGGAGGTCCATTCCAGCGACT
CATCCACCTGCGATGGCGTCTCCGCTGGCAAGCCCACACAGGTTGCGGGC
TGTTTCAAGTCTCCCAAGAAGTTTACCGTTTCGCCGATCAGTGAGCAGAA
GCAGAGACCAGTGCCCTTGTGTCCCAGAGATGTTCCGGGACTTTCCTCGA
GCCAGATACCATGCATAAAACACTTTGACCTTGACCACTCAGTAACAGTC
CGAAAAGAGCACCTGATCTCCAATCCCGAAACGGAGGCCTTACAAAAACA
CGCCTTCACCGAAATTTGGATCGATTCGCAGCAGAAACCTTGCCAGGCCA
AGGTTTCTCGCTTGCAGCAGTTTTCTATGGCCCTGGAGGCCTATTTTGAC
CAGGATTCTGACAAGAAGGATCCGGAGCCAGCAAAAACCATCACGCCTGC
TCCGAAAAGTGACAAACCCGTGGAGAAGGTGGTGTATGTGTCTCCCTTTC
CGGACATTCCCATACCACCATCAGCTCGAAAAGAAACTCGCATGTTGAGC
GGAGTTAAGCCACCCAATATAGTGCCAGCTGGCTTTGATTTGACCCGATT
GATTGAGTACAATAATCCCAATCACTGGCACCGTCGTCCCCACATGCGCA
CTGGCGATAGCATAGCAAGCT
MXO02711.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:20:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5194-PA | 909 | CG5194-RA | 1..906 | 9..914 | 4530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5194-RA | 1113 | CG5194-RA | 78..983 | 9..914 | 4530 | 100 | Plus |
| CG5194-RB | 1095 | CG5194-RB | 78..965 | 9..914 | 4250 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9009032..9009530 | 686..188 | 2495 | 100 | Minus |
| 3L | 28110227 | 3L | 9008754..9008981 | 914..687 | 1140 | 100 | Minus |
| 3L | 28110227 | 3L | 9009581..9009761 | 189..9 | 905 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:29:08 has no hits.
MXO02711.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:53 Download gff for
MXO02711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5194-PA | 1..909 | 9..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:38 Download gff for
MXO02711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5194-RA | 71..989 | 1..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:27 Download gff for
MXO02711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5194-RA | 71..989 | 1..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:27 Download gff for
MXO02711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9008748..9008981 | 687..921 | 98 | <- | Minus |
| 3L | 9009032..9009529 | 189..686 | 100 | <- | Minus |
| 3L | 9009582..9009768 | 1..188 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:38 Download gff for
MXO02711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9001848..9002081 | 687..921 | 98 | <- | Minus |
| arm_3L | 9002132..9002629 | 189..686 | 100 | <- | Minus |
| arm_3L | 9002682..9002868 | 1..188 | 97 | | Minus |
