MXO02715.5prime Sequence
793 bp (623 high quality bases) assembled on 2007-04-13
> MXO02715.5prime
CAGTCGACATGCCGGAAGAACCACATAAAACGGCGGACGACAAGCGCAGT
CACTTGCCGTGGATTGAGAAGTACCGCCCCGTGAAGTTCAAGGAGATAGT
GGGCAATGAGGATACCGTAGCAAGACTATCCGTATTCGCCACCCAGGGAA
ATGCACCCAATATTATTATTGCTGGTCCTCCTGGCGTGGGCAAGACAACC
ACCATCCAGTGTCTGGCCAGGATTCTCCTGGGAGACAGCTACAAGGAGGC
TGTCCTCGAGCTGAATGCCTCCAATGAACGAGGAATCGATGTGGTCCGCA
ACAAGATCAAGATGTTTGCTCAGCAGAAGGTGACACTGCCGCGGGGCAGG
CACAAGATTGTGATTCTGGACTATGCGGACAGCATGACGGAGGGTGCCCA
GCAGGCACTGCGCCGGACCATGGAGATCTACAGCAGCACCACTCGTTTTG
CCCTGGCCTGCAACACCAGCGAGAAGATCATAGAGCCTATCCAGTCCCGC
TGCGCCATGCTACGATTCACCAAGCTGTCCGATGCGCAAGTTCTGGCCAA
GCTCATCGAGGTGGCCAAGTGGGAGAAGCTTAACTACACGGAGGACGGAC
TTGAGGCCATCGTATTCACTGCCCAAAGTGATATGCGACAGGGACTGAAC
AACCTGCAGTCCACCGCTCAGGGATTTGGCGACATCACCGCTGACAACGT
CTTTAAGGTCTGCGACGAGCCGCACCCAAAGCTCCTAGAGGAGATGATCC
ACCATTGCGCTGCTAACGACGTACACAAAGCCTACAAAATCCT
MXO02715.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:20:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14999-PA | 996 | RfC40-RA | 1..785 | 9..793 | 3725 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RfC4-RA | 1127 | CG14999-RA | 56..840 | 9..793 | 3805 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4135147..4135766 | 793..174 | 3010 | 99 | Minus |
| 3L | 28110227 | 3L | 4135818..4135983 | 174..9 | 800 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:16:44 has no hits.
MXO02715.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:54 Download gff for
MXO02715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14999-PA | 1..785 | 9..793 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:46 Download gff for
MXO02715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC4-RA | 50..840 | 1..793 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:17 Download gff for
MXO02715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC4-RA | 50..840 | 1..793 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:17 Download gff for
MXO02715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4135147..4135766 | 174..793 | 99 | <- | Minus |
| 3L | 4135819..4135989 | 1..173 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:46 Download gff for
MXO02715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4135147..4135766 | 174..793 | 99 | <- | Minus |
| arm_3L | 4135819..4135989 | 1..173 | 96 | | Minus |
