MXO02717.5prime Sequence
919 bp (847 high quality bases) assembled on 2007-04-13
> MXO02717.5prime
CAGTCGACATGTTTGGCGCCACACAATCGACGAACCGAATGAACGACTTC
GAGGTCGCCTCGCCGCCGGACGACTCCGTCTCGGCGCTGGAGTTCAGCCC
CAGCACGGTGCAGAAGAACTTCCTGGTGGCCGGAAGCTGGGACAGCACGG
TCCGCTGCTGGGAGGTGGAACAAAACGGGGCCACTGTGCCCAAGTCGATG
AAGACCATGGGCGGACCGGTGCTGGACGTTTGCTGGTCGGACGACGGCAG
CAAAGTGTTCGTCGCCTCCTGCGACAAGCAGGTGAAGCTCTGGGACCTCG
CCTCCGATCAAGTGATGCAAGTGGCGGCCCACGACGGTCCCGTTAAGACG
TGCCACATGGTCAAGGGACCCACGTACACCTGCCTCATGACCGGCTCCTG
GGACAAGACCCTAAAGTTCTGGGACACCCGTTCGCCCAATCCCATGATGA
CCATCAATCTACCCGAGCGGTGCTACTGCGCCGATGTGGAGTATCCGATG
GCCGTGGTGGGCACGGCCAACAGAGGACTCATCATATACTCGCTGCAGAA
TAGCCCAACCAGAGTACAAGCGGCAGGAGAGTCCGCTGAAGTACCAGCAC
CGTGCCATTTCCATTTTCCGGGACAAGAAAAAAGAGCCCACAGGCTGTGC
GCTGGGCAGCATTGAGGGCCGTGTGGCCATTCAGTATGTGAATCCGGGGA
ATCCAAAAGATAACTTCACCTTCAAGTGCCACCGTACTACGGGCACCTCA
GGCTACCAGGATATTTATGCAGTAAATGACATCGCATTCCACCCTGTGCA
CGGCACCCTGGTGACCGTTGGCTCAGATGGCACCTTCAGTTTCTGGGACA
AGGATGCCCGGACCAAGCTCAAGTCCAGCGAGACCATGGATCAGTCCATT
ACCAAATGCGGATTTTACG
MXO02717.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:21:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9862-PA | 1041 | Rae1-RA | 1..906 | 9..915 | 4495 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rae1-RA | 1189 | CG9862-RA | 76..985 | 9..919 | 4515 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21658974..21659477 | 919..415 | 2460 | 99.6 | Minus |
| 2R | 25286936 | 2R | 21659525..21659932 | 416..9 | 2040 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:31 has no hits.
MXO02717.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:55 Download gff for
MXO02717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9862-PA | 1..910 | 9..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:13 Download gff for
MXO02717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rae1-RA | 69..985 | 1..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:58 Download gff for
MXO02717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rae1-RA | 69..985 | 1..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:58 Download gff for
MXO02717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21658974..21659475 | 417..919 | 99 | <- | Minus |
| 2R | 21659525..21659939 | 1..416 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:13 Download gff for
MXO02717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17546479..17546980 | 417..919 | 99 | <- | Minus |
| arm_2R | 17547030..17547444 | 1..416 | 99 | | Minus |
