MXO02718.5prime Sequence
841 bp (687 high quality bases) assembled on 2007-04-13
> MXO02718.5prime
CAGTCGACATGCGCGCCTTCATCGTAATGTGCCTGGTGGCAGTCGCCTGC
GCCGATAAGCTCGGCTACAACTACCAGCCCGTGGGACACTCCAGCTCCGG
ACTGTCCTTTGCTCCTGGAAGTGGCAGCATTGGAGGTGGATCCATTGGAG
GTGGTTCGATTGGAGGAGGCTCCATTGGAGGAGGATCCATTGGAGGAGGC
CTCATTGGTGGTGGCTCTATCGGAGGCGGTTCCATTGGAGGTGGTTCCCT
TGGTGGTTCCATCGGTGGTGGCTCTATTGATTCCGGTCTTGGCGGTCTTG
GTGGACTCGGTGGTCTAGGAGGTGGCGACGCTCTGGCCGCTCCAGTCTCC
TACAACGCCCCCGCTCCCGCTGCTGAGCTCCAAAAGGAGTTCTTCACCTA
CTCCGCCAACGAACAGGACTTCGATGAGCCACAAGAACTGGAGCGTGTTG
CTGGATCCGTAAACAAGGGACTGCGCGTTGTCTTCATCAAGGGACCCGAG
AACCGTGGTCTGGAGAACGCTGCCCTAGCCCTCGCCAAGCAGGCTGCCCA
GCAGGAGACCGCCATCTATGTCCTGAACAAGCAGGCCGATATTGGAGATC
TTGCCCAGAAACTGAACGCCATCCGCAACAACAATAACAACAAGCCCGAG
GTGCACTTCGTCAAGTACCGCACTCCCGAGGATGCTGCCAACGCCCAGCG
CGCCATCCAGTCTCAGTACGACCAATTGGGAGGATCCTCTCACGCCCACA
ACGGTGGTGTGGCACCCGCCCTGAACTTCGCCTCCGCTGGTCCCGTCCAG
AAGGCTAATGCTCAGATCCCTGAGAACGCTTACCTGCCCAC
MXO02718.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:21:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6447-PA | 858 | CG6447-RA | 1..833 | 9..841 | 4065 | 99.5 | Plus |
| CG6447-PB | 840 | CG6447-RB | 1..815 | 27..841 | 3975 | 99.5 | Plus |
| CG6478-PA | 861 | CG6478-RA | 229..734 | 237..742 | 2205 | 97.4 | Plus |
| CG5468-PA | 867 | CG5468-RA | 475..741 | 471..737 | 985 | 94.7 | Plus |
| CG5476-PA | 930 | CG5476-RA | 511..682 | 456..627 | 710 | 96.5 | Plus |
| CG5471-PA | 924 | CG5471-RA | 514..678 | 534..698 | 625 | 95.1 | Plus |
| CG5468-PA | 867 | CG5468-RA | 1..143 | 9..151 | 565 | 95.8 | Plus |
| CG5476-PA | 930 | CG5476-RA | 691..797 | 636..742 | 510 | 99 | Plus |
| CG6452-PA | 690 | CG6452-RA | 250..405 | 456..611 | 430 | 91 | Plus |
| CG6460-PA | 744 | CG6460-RA | 484..570 | 612..698 | 385 | 97.7 | Plus |
| CG6478-PA | 861 | CG6478-RA | 26..110 | 34..118 | 325 | 95.2 | Plus |
| CG5476-PA | 930 | CG5476-RA | 1..110 | 9..118 | 275 | 90 | Plus |
| CG6478-PA | 861 | CG6478-RA | 745..833 | 753..841 | 270 | 92.1 | Plus |
| CG6460-PA | 744 | CG6460-RA | 406..464 | 534..592 | 270 | 98.3 | Plus |
| CG31080-PA | 726 | CG31080-RA | 391..458 | 534..601 | 240 | 94.1 | Plus |
| CG6478-PA | 861 | CG6478-RA | 127..218 | 135..226 | 235 | 90.2 | Plus |
| CG5476-PA | 930 | CG5476-RA | 400..485 | 345..430 | 230 | 90.6 | Plus |
| CG6452-PA | 690 | CG6452-RA | 442..515 | 648..721 | 220 | 91.8 | Plus |
| CG5471-PA | 924 | CG5471-RA | 442..495 | 462..515 | 195 | 94.4 | Plus |
| CG31080-PA | 726 | CG31080-RA | 478..530 | 621..673 | 190 | 94.3 | Plus |
| CG6460-PA | 744 | CG6460-RA | 334..387 | 462..515 | 170 | 92.5 | Plus |
| CG14243-PA | 771 | CG14243-RA | 505..542 | 648..685 | 165 | 97.3 | Plus |
| CG5480-PA | 852 | CG5480-RA | 418..460 | 534..576 | 165 | 95.3 | Plus |
| CG5468-PA | 867 | CG5468-RA | 388..434 | 384..430 | 160 | 93.6 | Plus |
| CG14250-PA | 738 | CG14250-RA | 486..530 | 641..685 | 150 | 93.3 | Plus |
| CG31080-PA | 726 | CG31080-RA | 338..380 | 481..523 | 140 | 93 | Plus |
| CG14243-PA | 771 | CG14243-RA | 391..428 | 534..571 | 140 | 94.7 | Plus |
| CG14240-PA | 663 | CG14240-RA | 424..456 | 636..668 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlL-RA | 1002 | CG6447-RA | 51..883 | 9..841 | 4105 | 99.5 | Plus |
| TwdlL-RB | 1066 | CG6447-RB | 130..947 | 24..841 | 4030 | 99.5 | Plus |
| TwdlB-RA | 1025 | CG6478-RA | 48..880 | 9..841 | 3310 | 93.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26624706..26625523 | 841..24 | 4030 | 99.5 | Minus |
| 3R | 32079331 | 3R | 26622596..26623403 | 841..34 | 3275 | 93.7 | Minus |
| 3R | 32079331 | 3R | 26632323..26632824 | 338..839 | 1715 | 89.4 | Plus |
| 3R | 32079331 | 3R | 26619592..26620034 | 345..787 | 1480 | 88.9 | Plus |
| 3R | 32079331 | 3R | 26630214..26630621 | 378..785 | 1095 | 84.6 | Plus |
| 3R | 32079331 | 3R | 26628051..26628379 | 785..457 | 1045 | 87.8 | Minus |
| 3R | 32079331 | 3R | 26634088..26634494 | 375..781 | 865 | 80.8 | Plus |
| 3R | 32079331 | 3R | 26626108..26626448 | 796..456 | 850 | 83.3 | Minus |
| 3R | 32079331 | 3R | 26619262..26619485 | 27..253 | 620 | 85.9 | Plus |
| 3R | 32079331 | 3R | 26620774..26621063 | 763..474 | 430 | 76.6 | Minus |
| 3R | 32079331 | 3R | 26631931..26632040 | 9..118 | 385 | 90 | Plus |
| 3R | 32079331 | 3R | 26640530..26640724 | 534..728 | 315 | 77.4 | Plus |
| 3R | 32079331 | 3R | 26656956..26657058 | 483..585 | 275 | 84.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:31:39 has no hits.
MXO02718.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:55 Download gff for
MXO02718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6447-PA | 1..833 | 9..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:08 Download gff for
MXO02718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RA | 51..883 | 9..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:43 Download gff for
MXO02718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RA | 51..883 | 9..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:43 Download gff for
MXO02718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26624706..26625523 | 24..841 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:08 Download gff for
MXO02718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22450428..22451245 | 24..841 | 99 | <- | Minus |
