MXO02720.5prime Sequence
934 bp (859 high quality bases) assembled on 2007-04-13
> MXO02720.5prime
CAGTCGACATGAATACAATTCGTCCTTGCGGTTGTAAGGGCGTTCGCACC
TGCTTGAGCTGCGAACAGGACTTTCATATAGCGAAGACCTCGCTACGGGA
ACAATTCCAGCAACTGGAAGCATGGTCCTACTGTATCCAGTGCGACCTTC
TGCAGCGCGGTTGGGATACCAATCATGTCCAAAAGGATCATGAAAATCAC
AAAAAAGATGAGGGCCTCCCACTGCCGGGCATCCTGGTGCAGGAGGAATT
CCTTAGCGTTGATGAGGGCGCCCAACTTATAGCCGACTTGGATGACCTGC
CATGGGACATCTCGCAGAGCGGCAGGCGAAAACAGAACTTCGGACCCAAG
ACCAACTTTAAAAAGCGCAAACTGCGGCTGGGATCCTTTGCCGGATTCCC
CAGGACAACGGAATATGTGCAACGGCGCTTCGAAGACGTTCCCCTGCTTC
GTGGCTTTCAGACCATCGAACAGTGCTCCCTGGAGTACGAGCCCAGCAAA
GGAGCCAGCATAGATCCGCACGTGGACGATTGCTGGATCTGGGGCGAGCG
TGTGGTCACTGTCAACTGCCTCGGCGACTCAGTGCTCACTTTGACGCCCT
ACGAAGTTCAACAATCGGGCAAGTACAACTTGGACTTGGTTGCCAGCTAC
GAAGATGAACTATTGGCGCCTCTACTGACAGATGACCAACTTGCAACTTT
TGAGGGAAAGGTGCTGCGCATACCTATGCCAAACCTCTCCTTGATAGTTT
TGTATGGGCCAGCGAGGTACCAGTTTGAGCATTCTGTACTACGCGAGGAT
GTCCAAGAGCGCCGCGTTTGTGTAGCCTACCGGGAGTTTACGCCCATGTA
CATCAATGGCGTAGACATCCAAAAGGAGATCCTGTCCGAGAAAGTCTCAG
ATATTCTGGGCAATAAACGCAAGCTTTCTAGACC
MXO02720.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:21:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4036-PA | 915 | CG4036-RA | 1..903 | 9..909 | 4435 | 99.7 | Plus |
| CG18854-PA | 282 | CG18854-RA | 81..272 | 566..757 | 660 | 93.7 | Plus |
| CG18854-PC | 363 | CG18854-RC | 162..353 | 566..757 | 660 | 93.7 | Plus |
| CG18854-PB | 282 | CG18854-RB | 81..272 | 566..757 | 660 | 93.7 | Plus |
| CG18854-PA | 282 | CG18854-RA | 18..68 | 26..76 | 205 | 96 | Plus |
| CG18854-PC | 363 | CG18854-RC | 99..149 | 26..76 | 205 | 96 | Plus |
| CG18854-PB | 282 | CG18854-RB | 18..68 | 26..76 | 205 | 96 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4036-RB | 950 | CG4036-RB | 22..933 | 9..918 | 4480 | 99.6 | Plus |
| CG4036-RA | 1002 | CG4036-RA | 74..985 | 9..918 | 4480 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9790970..9791694 | 9..733 | 3625 | 100 | Plus |
| 2L | 23513712 | 2L | 9791755..9791941 | 734..918 | 805 | 97.9 | Plus |
| 2L | 23513712 | 2L | 9789367..9789534 | 733..566 | 705 | 94.6 | Minus |
| 2L | 23513712 | 2L | 9789536..9789614 | 87..9 | 275 | 89.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:50:08 has no hits.
MXO02720.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:56 Download gff for
MXO02720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4036-PA | 1..915 | 9..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:53 Download gff for
MXO02720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4036-RA | 70..991 | 1..922 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:28 Download gff for
MXO02720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4036-RA | 70..991 | 1..922 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:28 Download gff for
MXO02720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9790966..9791694 | 1..733 | 99 | -> | Plus |
| 2L | 9791755..9791947 | 734..922 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:53 Download gff for
MXO02720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9791755..9791947 | 734..922 | 96 | | Plus |
| arm_2L | 9790966..9791694 | 1..733 | 99 | -> | Plus |
