MXO02728.5prime Sequence
691 bp (691 high quality bases) assembled on 2007-04-13
> MXO02728.5prime
CAGTCGACATGCAGATTCTACAGACGATCAAAAGCACCAAAAAGAAGTTC
GGCATGCGCAACTTGGCCACGGTTACCTATGAGGCACTGCAGTATCTGGA
GGAGTCGCCCTGCAAGACACAAACTCGTGAGAACATTATGAATTACGTTA
AAGACCTGTCTTCTTATCGTCTAAAGTCCCAAGAGATCCTGCAAATGATC
AACGATCCGCCTACAAGTGCACTACACACGCAACTGCTCATCGACGACAA
TAAAGCTCCACTAACCGATGAGGAGAACGAGAAAATCATTCAGCTGAGCT
ACAAACACTTCCATGGTGGAGAAACCAAAGGCGCTGCTAAGGAAACACCG
GCGGAAAAGCCTGCGGAGTCCACTGCGAAGGCCGGCAAGCAATCTGGCGT
AAAGCGTAATGCCCAGGCAAAATCCAATCCAGCGGAACAAATAGCTCCAG
CGGACAAAACCACGCCAGGTGATGGAGTTACTCCTGCGAATGTCGCTACT
CCTTCAAGTGAAGCCACTACTACTACTCCAGCAGAAGAAGCAAGCCCAGT
GGAAACATCGNTCTTCAGAAAATAATGCTACTCCAGCAAATGAAGCCACT
ACAGCGCCTGCAACGGATGCACCCACTTCAATGGAAACCAAGTCCAATCC
GACACCAGATGGAGAAAACCTCGGGGCAAGCTTTCTAGACC
MXO02728.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4875-PA | 669 | CG4875-RA | 1..666 | 9..675 | 3270 | 99.7 | Plus |
| CG4875-PB | 717 | CG4875-RB | 49..714 | 9..675 | 3270 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcp-RC | 1138 | CG4875-RC | 69..734 | 9..675 | 3295 | 99.7 | Plus |
| Rcp-RB | 1080 | CG4875-RB | 69..734 | 9..675 | 3295 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16885075..16885513 | 236..675 | 2150 | 99.8 | Plus |
| X | 23542271 | X | 16884862..16885016 | 82..236 | 775 | 100 | Plus |
| X | 23542271 | X | 16884726..16884801 | 9..84 | 365 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:35:14 has no hits.
MXO02728.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:59 Download gff for
MXO02728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4875-PB | 46..717 | 3..676 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:11 Download gff for
MXO02728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcp-RB | 66..738 | 3..681 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:10 Download gff for
MXO02728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcp-RB | 66..738 | 3..681 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:10 Download gff for
MXO02728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16884723..16884800 | 3..83 | 95 | -> | Plus |
| X | 16884864..16885016 | 84..236 | 100 | -> | Plus |
| X | 16885076..16885517 | 237..681 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:11 Download gff for
MXO02728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16778756..16778833 | 3..83 | 95 | -> | Plus |
| arm_X | 16778897..16779049 | 84..236 | 100 | -> | Plus |
| arm_X | 16779109..16779550 | 237..681 | 99 | | Plus |
