Clone MXO02729 Report

Search the DGRC for MXO02729

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:27
Well:29
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptTBCB-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02729.5prime Sequence

756 bp (368 high quality bases) assembled on 2007-04-13

> MXO02729.5prime
CAATCGACATGTCGACTATAATTGAAACCGGCAAGTCAGATTTCATCAAG
GTGAATGTTTCCAACTCTCACAATGATGCAGTCGCCTTCGAGGTCAAGTT
AGCCAAGGATCTAACAGTTGCCCAGCTCAAGACCAAACTTGAGATACTGA
CGGGCGGATGTGCCGGTACCATGAAGGTGCAGGTCTTCAAGGGTGACACC
TGCGTGTCCACAATGGACAACAATGACGCCCAACTGGGTTACTATGCCAA
CAGTGATGGACTCCGGCTGCATGTCGTCGATAGCTTTGCTACCTTCTCGT
TCGACAGCGCTCCCGTTGAGAAATTCGAACTGTCCAAAGATCAGTACGAA
CAGCGAACAGATTCTGTGCGCAACTACCTCAAGATTAATCGCATGGGCAA
GTACAACGATGAGGAGATGCAACAGGCGGAGGAGAAGAAGCGCCTTCAGG
CGGAGGAGATCCAAAAACGGGCGGAACTTTGTGTACTGGGTGGCAGATGT
GAGGTTACGGTTCCAGGTAATCCAACACGACAAGGAACAATCCGATACGA
TGGTCCGCTCGAAAGGAAAAGTGGTCACTTTATTGGAGTGGAATACGACG
AACCACTGGGGAAAAATAATGGAAGTTTCGGTGGAAAGGCCTACTTTACG
TGTGCCCCAAATTACGGCGGCTTTGTATCACCATTATCCGTTACGGTTGG
TGACTTTCCGCCGGATGACTTCAGCATGGATGACGAGCTCGCACGCTTTC
TAGACC

MXO02729.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG11242-PA 735 CG11242-RA 1..732 9..740 3535 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
TBCB-RA 1166 CG11242-RA 123..854 9..740 3585 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19486167..19486542 505..130 1880 100 Minus
2R 25286936 2R 19486593..19486715 131..9 615 100 Minus
2R 25286936 2R 19485983..19486106 625..502 575 97.6 Minus
2R 25286936 2R 19485806..19485922 740..624 555 98.3 Minus
Blast to na_te.dros performed on 2014-11-28 19:58:31 has no hits.

MXO02729.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:59 Download gff for MXO02729.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11242-PA 1..735 9..743 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:47 Download gff for MXO02729.5prime
Subject Subject Range Query Range Percent Splice Strand
TBCB-RA 119..854 1..740 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:44 Download gff for MXO02729.5prime
Subject Subject Range Query Range Percent Splice Strand
TBCB-RA 119..854 1..740 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:44 Download gff for MXO02729.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19485983..19486104 504..625 97 <- Minus
2R 19485806..19485920 626..740 98 <- Minus
2R 19486169..19486540 132..503 100 <- Minus
2R 19486593..19486719 1..131 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:47 Download gff for MXO02729.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15373488..15373609 504..625 97 <- Minus
arm_2R 15373311..15373425 626..740 98 <- Minus
arm_2R 15373674..15374045 132..503 100 <- Minus
arm_2R 15374098..15374224 1..131 96   Minus