MXO02729.5prime Sequence
756 bp (368 high quality bases) assembled on 2007-04-13
> MXO02729.5prime
CAATCGACATGTCGACTATAATTGAAACCGGCAAGTCAGATTTCATCAAG
GTGAATGTTTCCAACTCTCACAATGATGCAGTCGCCTTCGAGGTCAAGTT
AGCCAAGGATCTAACAGTTGCCCAGCTCAAGACCAAACTTGAGATACTGA
CGGGCGGATGTGCCGGTACCATGAAGGTGCAGGTCTTCAAGGGTGACACC
TGCGTGTCCACAATGGACAACAATGACGCCCAACTGGGTTACTATGCCAA
CAGTGATGGACTCCGGCTGCATGTCGTCGATAGCTTTGCTACCTTCTCGT
TCGACAGCGCTCCCGTTGAGAAATTCGAACTGTCCAAAGATCAGTACGAA
CAGCGAACAGATTCTGTGCGCAACTACCTCAAGATTAATCGCATGGGCAA
GTACAACGATGAGGAGATGCAACAGGCGGAGGAGAAGAAGCGCCTTCAGG
CGGAGGAGATCCAAAAACGGGCGGAACTTTGTGTACTGGGTGGCAGATGT
GAGGTTACGGTTCCAGGTAATCCAACACGACAAGGAACAATCCGATACGA
TGGTCCGCTCGAAAGGAAAAGTGGTCACTTTATTGGAGTGGAATACGACG
AACCACTGGGGAAAAATAATGGAAGTTTCGGTGGAAAGGCCTACTTTACG
TGTGCCCCAAATTACGGCGGCTTTGTATCACCATTATCCGTTACGGTTGG
TGACTTTCCGCCGGATGACTTCAGCATGGATGACGAGCTCGCACGCTTTC
TAGACC
MXO02729.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11242-PA | 735 | CG11242-RA | 1..732 | 9..740 | 3535 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TBCB-RA | 1166 | CG11242-RA | 123..854 | 9..740 | 3585 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19486167..19486542 | 505..130 | 1880 | 100 | Minus |
2R | 25286936 | 2R | 19486593..19486715 | 131..9 | 615 | 100 | Minus |
2R | 25286936 | 2R | 19485983..19486106 | 625..502 | 575 | 97.6 | Minus |
2R | 25286936 | 2R | 19485806..19485922 | 740..624 | 555 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:58:31 has no hits.
MXO02729.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:22:59 Download gff for
MXO02729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11242-PA | 1..735 | 9..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:47 Download gff for
MXO02729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TBCB-RA | 119..854 | 1..740 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:44 Download gff for
MXO02729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TBCB-RA | 119..854 | 1..740 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:44 Download gff for
MXO02729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19485983..19486104 | 504..625 | 97 | <- | Minus |
2R | 19485806..19485920 | 626..740 | 98 | <- | Minus |
2R | 19486169..19486540 | 132..503 | 100 | <- | Minus |
2R | 19486593..19486719 | 1..131 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:47 Download gff for
MXO02729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15373488..15373609 | 504..625 | 97 | <- | Minus |
arm_2R | 15373311..15373425 | 626..740 | 98 | <- | Minus |
arm_2R | 15373674..15374045 | 132..503 | 100 | <- | Minus |
arm_2R | 15374098..15374224 | 1..131 | 96 | | Minus |