MXO02731.5prime Sequence
934 bp (748 high quality bases) assembled on 2007-04-13
> MXO02731.5prime
CAGTCGACATGTTAAGAAAATTAACAAAACTATCGACCTTAAAGGTCAAA
TGTGAACTCCGCGCCCTATCCTCACTCACCCAAACATCGCAACATATATT
TGACCGCAATGCCAAGAGATTACAGAAGGAAAGGGCCGCACTCAGCGAAG
ACGTTGGACTATACGATTACTTGAAGGAGGAGATCGGCTTCCGCCTGGCT
GACAGAGTATTCGACATTAAGCGGGAGTTCAAGGCGGCGGCGGATATCGG
ATGCAGTCGCGGCTATCTGTCCAGACACATTCTGGCGGAGAGTGTGGAGC
AGCTGACGCTCACGGACACCAGTGCTACGATGCTGGAGCAGGCACAGGGC
ACTCCGGGTCTGAAAATGGTGAAACTAGTTAAGGACGAAGAGCAGCTGGA
TTTTGAGGACAATTCACTGGATCTGGTCATCTCTAGCCTAAGTCTGCACT
GGGTGAATGATCTGCCGGGCTGCTTTGTCAGAATTAAGCAGAGTCTGAAA
CCGGATGGGGTCTTTATAGCCTCCATGTTTGGTGGAGACACCCTCTACGA
GCTGCGNCTCCTCGCTCCAATTGGCCGAGCTGGAGCGCAAAGGTGGCATA
TCTCCGCACATCTCGCCCTTCACTCAGATTAGGGATATTGGTTCCCTGCT
TAATCGCGCCGGCTTCACCATGCTGACAATAGACACCGATGAACTGGTCA
TCGGCTATCCCAGCATGTTCGAACTGATGTGGGATCTCAAGGGTATGGCA
GAGAACAATGCTGCATTCAATCGACCCGCTCATCTTAGTCGAGAAACGAT
GCTCGCGGCCAGTGCCATCTACCAGGAGCTGTATGCAAAGCCCAACGAGA
AGGGGATACCTGCAACCTTCCAAATCATCTACTTTGTGGGCTGGAAACCC
GGTCCAATCAACCACAGCCTCTGGAAAGAGGAAC
MXO02731.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8067-PA | 1002 | CG8067-RA | 1..926 | 9..934 | 4530 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8067-RB | 1321 | CG8067-RB | 233..1158 | 9..934 | 4570 | 99.7 | Plus |
| CG8067-RA | 1146 | CG8067-RA | 58..983 | 9..934 | 4570 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13984198..13984730 | 402..934 | 2555 | 99.4 | Plus |
| 2R | 25286936 | 2R | 13983882..13984140 | 143..401 | 1295 | 100 | Plus |
| 2R | 25286936 | 2R | 13983687..13983823 | 9..145 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:19 has no hits.
MXO02731.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:00 Download gff for
MXO02731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8067-PA | 1..926 | 9..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:59 Download gff for
MXO02731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8067-RA | 48..983 | 1..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:33 Download gff for
MXO02731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8067-RA | 48..983 | 1..934 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:33 Download gff for
MXO02731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13983677..13983823 | 1..145 | 97 | -> | Plus |
| 2R | 13983885..13984140 | 146..401 | 100 | -> | Plus |
| 2R | 13984198..13984730 | 402..934 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:59 Download gff for
MXO02731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9871390..9871645 | 146..401 | 100 | -> | Plus |
| arm_2R | 9871182..9871328 | 1..145 | 97 | -> | Plus |
| arm_2R | 9871703..9872235 | 402..934 | 99 | | Plus |
